ID   JN025131; SV 1; linear; genomic DNA; STD; VRT; 650 BP.
XX
AC   JN025131;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus rhotheus voucher NAFF 938 cytochrome oxidase subunit 1 (COI) gene,
DE   partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus rhotheus (torrent sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-650
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-650
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; d8aaea0419b977a73ace237d1a198cf9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..650
FT                   /organism="Cottus rhotheus"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Washington, Snohomish, Armstrong Creek"
FT                   /lat_lon="48.24 N 122.14 W"
FT                   /specimen_voucher="NAFF 938"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:214921"
FT   gene            <1..>650
FT                   /gene="COI"
FT   CDS             <1..>650
FT                   /codon_start=3
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:G1DWS1"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:G1DWS1"
FT                   /protein_id="AEK01755.1"
FT                   /translation="XLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAF
FT                   VMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGA
FT                   GTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQT
FT                   PLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 650 BP; 150 A; 192 C; 114 G; 193 T; 1 other;
     tttntctagt atttggtgct tgagccggaa tagtaggcac agctttaagc ctcctaattc        60
     gagcagaact aagccaaccc ggcgcccttt tgggggacga ccagatttat aatgtaattg       120
     ttacagccca tgctttcgta ataattttct ttatagtaat accaattata atcggaggtt       180
     tcgggaactg actcgttccc ctaatgattg gcgcccctga tatggccttt cctcgaataa       240
     ataatatgag cttttgactt cttcccccat cttttttact cctccttgcc tcttcgggag       300
     tcgaagcagg ggccggaacc gggtgaacag tctatccgcc cctcgccgga aacctcgccc       360
     acgcaggagc ctctgttgac ctaacaatct tctcccttca cctagcaggt atctcctcta       420
     ttcttggagc aatcaacttt atcacaacta ttattaacat aaaaccccct gctatttcac       480
     aataccagac cccgctcttt gtatgatctg ttcttattac tgccgtccta ctgcttcttt       540
     ccctccccgt tcttgccgcc ggtatcacaa tactcctgac agaccgaaat cttaacacca       600
     ccttctttga ccctgccgga ggaggagacc caatccttta ccaacatctc                  650
//