ID   JN025122; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN025122;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus pitensis voucher NAFF 875 cytochrome oxidase subunit 1 (COI) gene,
DE   partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus pitensis (pit sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; 209e8c3d8adcd730576b2ee2111af360.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus pitensis"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Oregon, Lake, Cottonwood Creek"
FT                   /lat_lon="42.22 N 120.48 W"
FT                   /specimen_voucher="NAFF 875"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:304285"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:G1DWR2"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:G1DWR2"
FT                   /protein_id="AEK01746.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGXGDPILYQHL"
XX
SQ   Sequence 652 BP; 150 A; 200 C; 116 G; 185 T; 1 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagccttaa gcctcctaat        60
     tcgagcagaa ctaagccaac ccggcgccct tttgggggac gaccagattt ataatgtaat       120
     tgttacggcc catgctttcg taataatttt ctttatagta ataccaatta taatcggggg       180
     tttcgggaac tgactcattc ccctaatgat cggcgcccct gatatggcct ttcctcgaat       240
     aaacaatatg agcttttgac ttcttccccc atctttttta ctcctcctag cctcttcggg       300
     ggtcgaagca ggggccggaa ccggatgaac agtttaccca cccctcgccg gaaacctcgc       360
     ccacgcaggg gcctctgttg acctaacgat cttctccctt cacctagcag gtatctcttc       420
     tattcttgga gcaatcaact ttatcacaac tatcattaat atgaaacccc ctgctatctc       480
     tcaataccag acccctctat tcgtatggtc tgttcttatt actgctgtcc tactgcttct       540
     ttccctcccc gtacttgccg ccggcatcac aatgctccta acagaccgaa accttaacac       600
     caccttcttt gaccccgccg gagnaggaga cccaatcctt taccaacacc tc               652
//