ID   JN025117; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN025117;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus perplexus voucher NAFF 865 cytochrome oxidase subunit 1 (COI) gene,
DE   partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus perplexus (reticulate sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; 0f5f0fdb8fa566df524e253a88e9d28f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus perplexus"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Oregon, Douglas, North Umpqua River"
FT                   /lat_lon="43.28 N 123.36 W"
FT                   /specimen_voucher="NAFF 865"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:214920"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:G1DWQ8"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:G1DWQ8"
FT                   /protein_id="AEK01741.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 150 A; 193 C; 117 G; 192 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagccttaa gcctcctaat        60
     tcgagcagaa ttaagccaac ccggcgccct tttgggggac gaccagattt ataatgtaat       120
     tgttacggcc catgctttcg taataatttt ctttatagta ataccaatta taattggggg       180
     tttcgggaac tgactcattc ccctaatgat cggcgcccct gatatggcct ttcctcgaat       240
     gaacaatatg agcttttgac ttcttccccc atctttttta ctcctcctag cctcttcggg       300
     ggtcgaagca ggagccggaa ccggatgaac agtttacccg cccctcgccg ggaacctcgc       360
     ccacgcaggg gcttctgttg acctaacaat cttctccctt cacctagcag gtatctcttc       420
     tattcttgga gcaatcaact ttatcacaac tatcattaat atgaaacccc ctgctatttc       480
     tcaataccag acccctctat tcgtatgatc tgttcttatt actgctgtcc tactgcttct       540
     ttccctcccc gtacttgccg ccggcatcac aatgctttta acagaccgaa accttaacac       600
     caccttcttt gaccctgccg gaggaggaga cccaatcctt taccaacacc tc               652
//