ID   JN025112; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN025112;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus klamathensis voucher NAFF 853 cytochrome oxidase subunit 1 (COI)
DE   gene, partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus klamathensis (marbled sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; b5549608a2896a4031a5e80b9d108270.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus klamathensis"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Oregon, Klamath, Upper Klamath Lake"
FT                   /lat_lon="42.44 N 121.87 W"
FT                   /specimen_voucher="NAFF 853"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:304278"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:G1DWQ2"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:G1DWQ2"
FT                   /protein_id="AEK01736.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 149 A; 204 C; 118 G; 181 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagccttga gcctcctaat        60
     ccgagcagaa ctaagccaac ccggcgccct tttgggggac gaccaaattt ataacgtgat       120
     tgttacagcc catgctttcg taataatttt ctttatagta ataccaatta taattggggg       180
     tttcgggaac tgactcgtcc ccctaatgat cggcgcccct gatatggcct ttcctcggat       240
     aaacaatatg agcttttgac ttcttccccc atcttttctc ctcctcctag cctcttcagg       300
     ggtcgaagcg ggggccggaa ccggatgaac agtttacccg cccctcgccg gaaacctcgc       360
     ccacgcaggg gcctctgttg acctaacaat cttctccctt cacctagcag gtatttcctc       420
     tatccttgga gcaatcaact ttatcacaac tatcattaat ataaaacccc ctgccatttc       480
     tcaataccag acccctctat tcgtatgatc tgttctgatt actgctgttc tactgcttct       540
     ctctcttccc gtactcgccg ccggcatcac aatgctccta acagaccgaa accttaacac       600
     caccttcttt gaccctgccg gaggaggaga cccaatcctc taccaacacc tc               652
//