ID   JN025110; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN025110;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   27-APR-2020 (Rel. 144, Last updated, Version 2)
XX
DE   Cottus immaculatus voucher NAFF 2518 cytochrome oxidase subunit 1 (COI)
DE   gene, partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus immaculatus (knobfin sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; dfa9b3b33a3fe5c5c553485605063a78.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus immaculatus"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Missouri, Ozark, North Fork White River"
FT                   /lat_lon="36.39 N 92.25 W"
FT                   /specimen_voucher="NAFF 2518"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /note="originally submitted as Cottus hypselurus"
FT                   /db_xref="taxon:2707739"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:G1DWP8"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:G1DWP8"
FT                   /protein_id="AEK01734.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 150 A; 192 C; 115 G; 195 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggt acagctctaa gcctcctaat        60
     tcgagcagaa ctaagccaac ccggcgccct tttgggggac gaccagattt ataatgtaat       120
     tgttactgcc catgctttcg taataatctt ctttatagta ataccaatca taatcggagg       180
     tttcgggaac tgactcgttc ccctaatgat tggcgctcct gatatggctt ttcctcgaat       240
     aaataatatg agcttttgac ttcttccccc atctttttta ctactccttg cctcttcggg       300
     ggtcgaagca ggggccggaa ccgggtgaac agtttatcca cctctagccg gaaacctcgc       360
     ccacgcagga gcctctgttg acctaacaat tttttccctc cacctagcag gtatctcctc       420
     tattcttggg gcaatcaact ttatcacaac tatcattaac atgaaacccc ctgctatctc       480
     acaataccag acccctctct ttgtctgatc tgttcttatt actgccgtcc tactgcttct       540
     ttctctcccc gttcttgccg ccggcattac aatactccta acagaccgaa atcttaacac       600
     caccttcttt gaccctgccg gaggagggga cccaatcctt taccaacacc tc               652
//