ID   JN025073; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN025073;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus cf. carolinae BOLD:AAB3522 voucher NAFF 6546 cytochrome oxidase
DE   subunit 1 (COI) gene, partial cds; mitochondrial.
XX
KW   .
XX
OS   Cottus cf. carolinae BOLD:AAB3522
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; b392d877e7ef51404a5d15aafb00ee30.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus cf. carolinae BOLD:AAB3522"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Alabama, Jefferson, Turkey Creek"
FT                   /specimen_voucher="NAFF 6546"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:1046052"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:G1DWL3"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:G1DWL3"
FT                   /protein_id="AEK01697.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 148 A; 190 C; 120 G; 194 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagctttaa gcctcctaat        60
     tcgagcagaa ttaagtcaac ccggcgccct tttgggggac gatcagattt ataatgtaat       120
     tgttacagcc catgctttcg taataatttt ctttatagta ataccgatta taatcggagg       180
     cttcgggaac tggctcgttc ccctaatgat tggcgctcct gacatagcct ttcctcgaat       240
     gaataatatg agcttttgac ttcttccccc atctttttta ctcctccttg cctcttcggg       300
     agtcgaagca ggggccggaa ccggatgaac agtttatcca cccctcgccg gaaatctcgc       360
     ccacgcagga gcttctgttg acctaacaat cttctccctt cacctagcag gtatctcctc       420
     tattcttggg gcaatcaact ttatcacaac tatcattaat ataaaacccc ctgctatttc       480
     acaataccag accccgctat ttgtgtggtc tgttcttatc accgctgtgc tgctgcttct       540
     ctccctcccc gttcttgccg ccggcatcac aatactcctg acagaccgaa atcttaacac       600
     caccttcttt gaccctgccg gaggagggga cccaatcctt taccaacatc tc               652
//