ID   JN025069; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN025069;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus cf. bairdii BOLD:AAF0504 voucher NAFF 6561 cytochrome oxidase
DE   subunit 1 (COI) gene, partial cds; mitochondrial.
XX
KW   .
XX
OS   Cottus cf. bairdii BOLD:AAF0504
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; 3e6051dbbbe6e10c17064c1ad3e08564.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus cf. bairdii BOLD:AAF0504"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:North Carolina, Cherokee, Valley River"
FT                   /specimen_voucher="NAFF 6561"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:1046051"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:G1DWK9"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:G1DWK9"
FT                   /protein_id="AEK01693.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 148 A; 195 C; 119 G; 190 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagctttaa gcctcctaat        60
     tcgagcagaa ttaagtcaac ccggcgccct tttgggggac gaccagattt ataatgtaat       120
     tgttacagcc catgctttcg taataatttt ctttatagta ataccgatta taatcggggg       180
     tttcgggaac tggctcgttc ccctaatgat tggcgctcct gatatggcct ttcctcgaat       240
     gaataatatg agcttttgac ttcttccccc atctttttta ctcctccttg cctcctcggg       300
     ggtcgaagca ggggccggaa ccggatgaac agtttaccca cccctcgccg gaaacctcgc       360
     ccacgcagga gcctctgttg acctaacaat cttctccctt cacctagcag gtatctcctc       420
     tattcttgga gcaattaact ttatcacaac catcattaat ataaaacccc cagctatctc       480
     acaataccag accccgctct ttgtatggtc tgttcttatt actgctgtcc tactgcttct       540
     ttccctcccc gtccttgccg ccggcatcac aatactcctg acagaccgaa atcttaacac       600
     caccttcttt gaccccgccg gaggagggga cccaatcctt taccaacatc tc               652
//