ID   JN024992; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN024992;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus bairdii voucher NAFF 6657 cytochrome oxidase subunit 1 (COI) gene,
DE   partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus bairdii (mottled sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; 977583925955baa1d60d269144dbf29a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus bairdii"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Oregon, Washington, Willamette Drainage,
FT                   Gales Creek"
FT                   /lat_lon="45.64 N 123.37 W"
FT                   /specimen_voucher="NAFF 6657"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:147208"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:B2LHM0"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:B2LHM0"
FT                   /protein_id="AEK01616.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 149 A; 198 C; 117 G; 188 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagctttaa gcctcctaat        60
     tcgagcagaa ctaagccaac ccggcgccct tttgggggac gaccagattt acaatgtaat       120
     tgttacggcc catgctttcg taataatttt ctttatagta ataccaatca taatcggagg       180
     tttcgggaac tgactcgttc ccctaatgat tggcgctcct gatatggcct ttcctcgaat       240
     gaataatatg agcttttgac ttcttccccc atctttttta ctcctccttg cctcttcggg       300
     agtagaagca ggggccggaa ccggatgaac agtctacccg cccctcgccg gaaatctcgc       360
     ccacgcagga gcctctgttg acctaacaat cttctccctt cacctagcag gtatctcctc       420
     tattcttgga gcaatcaact ttatcacaac tattattaac atgaaacccc ctgctatctc       480
     acaataccag accccgctct ttgtatggtc tgttcttatt actgccgtcc tactcctcct       540
     ttccctcccc gttcttgccg ccggcatcac aatactcctg acagaccgaa atcttaacac       600
     caccttcttt gaccctgccg gaggagggga cccaatcctt taccaacatc tc               652
//