ID   JN024988; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   JN024988;
XX
DT   19-JUL-2011 (Rel. 109, Created)
DT   19-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Cottus aleuticus voucher NAFF 862 cytochrome oxidase subunit 1 (COI) gene,
DE   partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus aleuticus (coastrange sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-652
RX   DOI; 10.1073/pnas.1016437108.
RX   PUBMED; 21670289.
RA   April J., Mayden R.L., Hanner R.H., Bernatchez L.;
RT   "Genetic calibration of species diversity among North America's freshwater
RT   fishes";
RL   Proc. Natl. Acad. Sci. U.S.A. 108(26):10602-10607(2011).
XX
RN   [2]
RP   1-652
RA   April J., Mayden R.L., Hanner R., Bernatchez L.;
RT   ;
RL   Submitted (26-MAY-2011) to the INSDC.
RL   Institut de Biologie Integrative et des Systemes (IBIS), Universite Laval,
RL   1030 Avenue de la Medecine, Quebec, Quebec G1V 0A6, Canada
XX
DR   MD5; bcc6480f41eedd076a2d39e3164f4fa0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus aleuticus"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Washington, Snohomish, Pilchuck River"
FT                   /lat_lon="47.92 N 122.08 W"
FT                   /specimen_voucher="NAFF 862"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, rev_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac"
FT                   /PCR_primers="fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:214914"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:B2LI72"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:B2LI72"
FT                   /protein_id="AEK01612.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 149 A; 201 C; 117 G; 185 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagccttaa gcctcctaat        60
     tcgagcagaa ctaagccaac ccggcgccct tttaggagac gaccagattt ataatgtaat       120
     tgttacagcc catgctttcg taataatttt ctttatagta ataccaatta taatcggggg       180
     tttcgggaac tgactcattc ccctaatgat cggcgcccct gatatggcct ttcctcgaat       240
     aaacaatatg agcttttgac tccttccccc atctttctta ctcctcctag cctcttcggg       300
     ggtcgaagca ggggccggaa ccggatgaac agtctaccct cccctcgccg gaaacctcgc       360
     ccacgccggg gcctctgttg acctgacgat cttctccctt cacctagcag gtatttcctc       420
     tattcttgga gcaatcaact ttatcacaac tatcattaat atgaaacccc ctgctatttc       480
     tcaataccag accccgctat tcgtgtgatc tgttcttatt actgctgtcc tactgcttct       540
     ttctctcccc gtacttgccg ccggcatcac aatgctccta acagaccgaa accttaacac       600
     caccttcttt gaccctgccg gagggggaga cccaatcctt taccaacacc tc               652
//