ID FM865439; SV 1; circular; genomic DNA; STD; PRO; 7169 BP. XX AC FM865439; XX PR Project:PRJEA32371; XX DT 28-APR-2009 (Rel. 100, Created) DT 27-FEB-2015 (Rel. 123, Last updated, Version 4) XX DE Chlamydia trachomatis plasmid pSW2, strain Sweden2, serovar E XX KW . XX OS Chlamydia trachomatis OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pSW2 XX RN [1] RP 1-7169 RA Seth-Smith H.M.; RT ; RL Submitted (28-OCT-2008) to the INSDC. RL Seth-Smith H.M., Pathogen Genomics, Wellcome Trust Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UNITED KINGDOM. XX RN [2] RX DOI; 10.1186/1471-2164-10-239. RX PUBMED; 19460133. RA Seth-Smith H.M., Harris S.R., Persson K., Marsh P., Barron A., Bignell A., RA Bjartling C., Clark L., Cutcliffe L.T., Lambden P.R., Lennard N., RA Lockey S.J., Quail M.A., Salim O., Skilton R.J., Wang Y., Holland M.J., RA Parkhill J., Thomson N.R., Clarke I.N.; RT "Co-evolution of genomes and plasmids within Chlamydia trachomatis and the RT emergence in Sweden of a new variant strain"; RL BMC Genomics 10(1):239-239(2009). XX DR MD5; f4fc4770c8384c3882a9509c463d65e6. DR BioSample; SAMEA3138239. DR EuropePMC; PMC2693142; 19460133. DR EuropePMC; PMC3178582; 21966270. XX FH Key Location/Qualifiers FH FT source 1..7169 FT /organism="Chlamydia trachomatis" FT /plasmid="pSW2" FT /strain="Sweden2" FT /mol_type="genomic DNA" FT /serovar="E" FT /db_xref="taxon:813" FT rep_origin 1..88 FT /note="putative origin of replication; contains 4 copies of FT a 22bp repeat" FT CDS join(165..653,655..705) FT /transl_table=11 FT /locus_tag="PSW2_1" FT /product="putative virulence plasmid integrase FT (pseudogene)" FT /note="contains a 377bp deletion after codon 163" FT /protein_id="CAR95925.1" FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSLE FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR FT CSGEEVIPLVQTPTIL" FT CDS complement(756..1748) FT /transl_table=11 FT /locus_tag="PSW2_2" FT /product="putative virulence plasmid integrase" FT /protein_id="CAR95926.1" FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKLALI" FT repeat_region 1802..1889 FT /note="contains identical tandem repeat of 44 bp" FT CDS 1891..3246 FT /transl_table=11 FT /locus_tag="PSW2_3" FT /product="putative helicase, DnaB family" FT /protein_id="CAR95927.1" FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH FT HKNIFIVFKYLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA FT RGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKGNFVI FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW" FT CDS 3240..4304 FT /transl_table=11 FT /locus_tag="PSW2_4" FT /product="conserved hypothetical virulence plasmid protein" FT /protein_id="CAR95928.1" FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI FT IRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYILRMNRY FT ICTRNWKKIELAIDKCIEIAIKLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK FT SKEQMEQLEQESIN" FT CDS 4366..5160 FT /transl_table=11 FT /locus_tag="PSW2_5" FT /product="conserved hypothetical virulence plasmid protein" FT /protein_id="CAR95929.1" FT /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA FT KMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQDI FT LDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMF FT LVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTPTTYS FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" FT CDS 5230..5538 FT /transl_table=11 FT /locus_tag="PSW2_6" FT /product="conserved hypothetical virulence plasmid protein" FT /protein_id="CAR95930.1" FT /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" FT CDS 5566..6360 FT /transl_table=11 FT /locus_tag="PSW2_7" FT /product="putative plasmid partitioning protein, ParA FT family" FT /protein_id="CAR95931.1" FT /translation="MHTLVFCSFKGGTGKTTLSLNVGCNLAQFLGKKVLLADLDPQSNL FT SSGLGASVRSDQKGLHDIVYTSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPS FT NNLKLFLNEYCAPFYDICIIDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIRE FT FLSSVGKPEEEHILGIALSFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLL FT KEDSVANVYPNSRAAEDILKLTHEIANILHIEYERDYSQRTT" FT CDS 6357..7100 FT /transl_table=11 FT /locus_tag="PSW2_8" FT /product="conserved hypothetical virulence plasmid protein" FT /protein_id="CAR95932.1" FT /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL FT DRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM FT CSGVSLSSYNENLLQQLFELFKQKS" XX SQ Sequence 7169 BP; 2344 A; 1229 C; 1372 G; 2224 T; 0 other; tttgcaactc ttggtggtag actttgcaac tcttggtggt agactttgca actcttggtg 60 gtagactttg caactcttgg tggtagactt ggtcataatg gacttttgtt aaaaaatttc 120 ttaaaatctt agagctccga ttttgaatag ctttggttaa gaaaatgggc tcgatggctt 180 tccataaaag tagattgttt ttaacttttg gggacgcgtc ggaaatttgg ttatctactt 240 tatcttatct aactagaaaa aattatgcgt ctgggattaa ctttcttgtt tctttagaga 300 ttctggattt atcggaaacc ttgataaagg ctatttctct tgaccacagc gaatctttgt 360 ttaaaatcaa gtctctagat gtttttaatg gaaaagttgt ttcagaggca tctaaacagg 420 ctagagcggc atgctacata tctttcacaa agtttttgta tagattgacc aagggatata 480 ttaaacccgc tattccattg aaagattttg gaaacactac attttttaaa atccgagaca 540 aaatcaaaac agaatcgatt tctaagcagg aatggacagt tttttttgaa gcgctccgga 600 tagtgaatta tagagactat ttaatcggta aattgattgt acaagggatc cgtttgttct 660 ggggaagagg taattcctct agtacaaaca cccacaatat tgtgatataa ttaaaattat 720 attcatattc tgttgccaga aaaaacacct ttaggctata ttagagccag cttctttgaa 780 gcgttgtctt ctcgagaaga tttatcgtac gcaaatatca tctttgcggt tgcgtgtcct 840 gtgaccttca ttatgtcgga gtctgagcac cctaggcgtt tgtactccgt cacagcggtt 900 gctcgaagca cgtgcggggt tattttaaaa gggattgcag cttgtagtcc tgcttgagag 960 aacgtgcggg cgatttgcct taaccccacc atttttccgg agcgagttac gaagacaaaa 1020 cctcttcgtt gaccgatgta ctcttgtaga aagtgcataa acttctgagg ataagttata 1080 ataatcctct tttctgtctg acggttctta agctgggaga aagaaatggt agcttgttgg 1140 aaacaaatct gactaatctc caagcttaag acttcagagg agcgtttacc tccttggagc 1200 attgtctggg cgatcaacca atcccgggca ttgatttttt ttagctcttt taggaaggat 1260 gctgtttgca aactgttcat cgcatccgtt tttactattt ccctggtttt aaaaaatgtt 1320 cgactatttt cttgtttaga aggttgcgct atagcgacta ttccttgagt catcctgttt 1380 aggaatcttg ttaaggaaat atagcttgct gctcgaactt gtttagtacc ttcggtccaa 1440 gaagtcttgg cagaggaaac ttttttaatc gcatctagga ttagattatg atttaaaagg 1500 gaaaactctt gcagattcat atccaaggac aatagaccaa tcttttctaa agacaaaaaa 1560 gatcctcgat atgatctaca agtatgtttg ttgagtgatg cggtccaatg cataataact 1620 tcgaataagg agaagctttt catgcgtttc caataggatt cttggcgaat ttttaaaact 1680 tcctgataag acttttcact atattctaac gacatttctt gctgcaaaga taaaatccct 1740 ttacccatga aatccctcgt gatataacct atccgtaaaa tgtcctgatt agtgaaataa 1800 tcaggttgtt aacaggatag cacgctcggt atttttttat ataaacaggt tgttaacagg 1860 atagcacgct cggtattttt ttatataaac atgaaaactc gttccgaaat agaaaatcgc 1920 atgcaagata tcgagtatgc gttgttaggt aaagctctga tatttgaaga ctctactgag 1980 tatattctga ggcagcttgc taattatgag tttaagtgtt ctcatcataa aaacatattc 2040 atagtattta aatacttaaa agacaatgga ttacctataa ctgtagactc ggcttgggaa 2100 gagcttttgc ggcgtcgtat caaagatatg gacaaatcgt atctcgggtt aatgttgcat 2160 gatgctttat caaatgacaa gcttagatcc gtttctcata cggttttcct cgatgatttg 2220 agcgtgtgta gcgctgaaga aaatttgagt aatttcattt tccgctcgtt taatgagtac 2280 aatgaaaatc cattgcgtag atctccgttt ctattgcttg agcgtataaa gggaaggctt 2340 gatagtgcta tagcaaagac tttttctatt cgcagcgcta gaggccggtc tatttatgat 2400 atattctcac agtcagaaat tggagtgctg gctcgtataa aaaaaagacg agtagcgttc 2460 tctgagaatc aaaattcttt ctttgatggc ttcccaacag gatacaagga tattgatgat 2520 aaaggagtta tcttagctaa aggtaatttc gtgattatag cagctagacc atctataggg 2580 aaaacagctt tagctataga catggcgata aatcttgcgg ttactcaaca gcgtagagtt 2640 ggtttcctat ctctagaaat gagcgcaggt caaattgttg agcggattat tgctaattta 2700 acaggaatat ctggtgaaaa attacaaaga ggggatctct ctaaagaaga attattccga 2760 gtagaagaag ctggagaaac ggttagagaa tcacattttt atatctgcag tgatagtcag 2820 tataagctta acttaatcgc gaatcagatc cggttgctga gaaaagaaga tcgagtagac 2880 gtaatattta tcgattactt gcagttgatc aactcatcgg ttggagaaaa tcgtcaaaat 2940 gaaatagcag atatatctag aaccttaaga ggtttagcct cagagctaaa cattcctata 3000 gtttgtttat cccaactatc tagaaaagtt gaggatagag caaataaagt tcccatgctt 3060 tcagatttgc gagacagcgg tcaaatagag caagacgcag atgtgatttt gtttatcaat 3120 aggaaggaat cgtcttctaa ttgtgagata actgttggga aaaatagaca tggatcggtt 3180 ttctcttcgg tattacattt cgatccaaaa attagtaaat tctccgctat taaaaaagta 3240 tggtaaatta tagtaactgc cacttcatca aaagtcctat ccaccttgaa aatcagaagt 3300 ttggaagaag acctggtcaa tctattaaga tatctcccaa attggctcaa aatgggatgg 3360 tagaagttat aggtcttgat tttctttcat ctcattacca tgcattagca gctatccaaa 3420 gattactgac cgcaacgaat tacaagggga acacaaaagg ggttgtttta tccagagaat 3480 caaatagttt tcaatttgaa ggatggatac caagaatccg ttttacaaaa actgaattct 3540 tagaggctta tggagttaag cggtataaaa catccagaaa taagtatgag tttagtggaa 3600 aagaagctga aactgcttta gaagccttat accatttagg acatcaaccg tttttaatag 3660 tggcaactag aactcgatgg actaatggaa cacaaatagt agaccgttac caaactcttt 3720 ctccgatcat taggatttac gaaggatggg aaggtttaac tgacgaagaa aatatagata 3780 tagacttaac accttttaat tcaccaccta cacggaaaca taaagggttc gttgtagagc 3840 catgtcctat cttggtagat caaatagaat cctactttgt aatcaagcct gcaaatgtat 3900 accaagaaat aaaaatgcgt ttcccaaatg catcaaagta tgcttacaca tttatcgact 3960 gggtgattac agcagctgcg aaaaagagac gaaaattaac taaggataat tcttggccag 4020 aaaacttgtt attaaacgtt aacgttaaaa gtcttgcata tattttaagg atgaatcggt 4080 acatctgtac aaggaactgg aaaaaaatcg agttagctat cgataaatgt atagaaatcg 4140 ccattaagct tggctggtta tctagaagaa aacgcattga atttctggat tcttctaaac 4200 tctctaaaaa agaaattcta tatctaaata aagagcgctt tgaagaaata actaagaaat 4260 ctaaagaaca aatggaacaa ttagaacaag aatctattaa ttaatagcaa gcttgaaact 4320 aaaaacctaa tttatttaaa gctcaaaata aaaaagagtt ttaaaatggg aaattctggt 4380 ttttatttgt ataacactga aaactgcgtc tttgctgata atatcaaagt tgggcaaatg 4440 acagagccgc tcaaggacca gcaaataatc cttgggacaa catcaacacc tgtcgcagcc 4500 aaaatgacag cttctgatgg aatatcttta acagtctcca ataattcatc aaccaatgct 4560 tctattacaa ttggtttgga tgcggaaaaa gcttaccagc ttattctaga aaagttggga 4620 gatcaaattc ttgatggaat tgctgatact attgttgata gtacagtcca agatatttta 4680 gacaaaatca aaacagaccc ttctctaggt ttgttgaaag cttttaacaa ctttccaatc 4740 actaataaaa ttcaatgcaa cgggttattc actcccagta acattgaaac tttattagga 4800 ggaactgaaa taggaaaatt cacagtcaca cccaaaagct ctgggagcat gttcttagtc 4860 tcagcagata ttattgcatc aagaatggaa ggcggcgttg ttctagcttt ggtacgagaa 4920 ggtgattcta agccctgcgc gattagttat ggatactcat caggcattcc taatttatgt 4980 agtctaagaa ccagtattac taatacagga ttgactccga caacgtattc attacgtgta 5040 ggcggtttag aaagcggtgt ggtatgggtt aatgcccttt ctaatggcaa tgatatttta 5100 ggaataacaa atacttctaa tgtatctttt ttagaggtaa tacctcaaac aaacgcttaa 5160 acaattttta ttggattttt cttataggtt ttatatttag agaaaacagt tcgaattacg 5220 gggtttgtta tgcaaaataa aagaaaagtg agggacgatt ttattaaaat tgttaaagat 5280 gtgaaaaaag atttccccga attagaccta aaaatacgag taaacaagga aaaagtaact 5340 ttcttaaatt ctcccttaga actctaccat aaaagtgtct cactaattct aggactgctt 5400 caacaaatag aaaactcttt aggattattc ccagactctc ctgttcttga aaaattagag 5460 gataacagtt taaagctaaa aaaggctttg attatgctta tcttgtctag aaaagacatg 5520 ttttccaagg ctgaatagac aacttactct aacgttggag ttgatttgca caccttagtt 5580 ttttgctctt ttaagggagg aactggaaaa acaacacttt ctctaaacgt gggatgcaac 5640 ttggcccaat ttttagggaa aaaagtgtta cttgctgacc tagacccgca atccaattta 5700 tcttctggat tgggggctag tgtcagaagt gaccaaaaag gcttgcacga catagtatac 5760 acatcaaacg atttaaaatc aatcatttgc gaaacaaaaa aagatagtgt ggacctaatt 5820 cctgcatcat tttcatccga acagtttaga gaattggata ttcatagagg acctagtaac 5880 aacttaaagt tatttctgaa tgagtactgc gctccttttt atgacatctg cataatagac 5940 actccaccta gcctaggagg gttaacgaaa gaagcttttg ttgcaggaga caaattaatt 6000 gcttgtttaa ctccagaacc tttttctatt ctagggttac aaaagatacg tgaattctta 6060 agttcggtcg gaaaacctga agaagaacac attcttggaa tagctttgtc tttttgggat 6120 gatcgtaact cgactaacca aatgtatata gacattatcg agtctattta caaaaacaag 6180 cttttttcaa caaaaattcg tcgagatatt tctctcagcc gttctcttct taaagaagat 6240 tctgtagcta atgtctatcc aaattctagg gccgcagaag atattctgaa gttaacgcat 6300 gaaatagcaa atattttgca tatcgaatat gaacgagatt actctcagag gacaacgtga 6360 acaaactaaa aaaagaagcg gatgtctttt ttaaaaaaaa tcaaactgcc gcttctctag 6420 attttaagaa gacgcttccc tccattgaac tattctcagc aactttgaat tctgaggaaa 6480 gtcagagttt ggatcgatta tttttatcag agtcccaaaa ctattcggat gaagaatttt 6540 atcaagaaga catcctagcg gtaaaactgc ttactggtca gataaaatcc atacagaagc 6600 aacacgtact tcttttagga gaaaaaatct ataatgctag aaaaatcctg agtaaggatc 6660 acttctcctc aacaactttt tcatcttgga tagagttagt ttttagaact aagtcttctg 6720 cttacaatgc tcttgcatat tacgagcttt ttataaacct ccccaaccaa actctacaaa 6780 aagagtttca atcgatcccc tataaatccg catatatttt ggccgctaga aaaggcgatt 6840 taaaaaccaa ggtcgatgtg atagggaaag tatgtggaat gtcgaactca tcggcgataa 6900 gggtgttgga tcaatttctt ccttcatcta gaaacaaaga cgttagagaa acgatagata 6960 agtctgattc agagaagaat cgccaattat ctgatttctt aatagagata cttcgcatca 7020 tgtgttccgg agtttctttg tcctcctata acgaaaatct tctacaacag ctttttgaac 7080 tttttaagca aaagagctga tcctccgtca gctcatatat atatatctat tatatatata 7140 tatttaggga tttgatttca cgagagaga 7169 //