ID   EU524000; SV 1; linear; genomic DNA; STD; VRT; 652 BP.
XX
AC   EU524000;
XX
DT   03-MAY-2008 (Rel. 95, Created)
DT   06-MAR-2012 (Rel. 112, Last updated, Version 6)
XX
DE   Cottus rhotheus voucher BIOUG<CAN>:BCF-674-1 cytochrome oxidase subunit I
DE   (COI) gene, partial cds; mitochondrial.
XX
KW   BARCODE.
XX
OS   Cottus rhotheus (torrent sculpin)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-652
RX   PUBMED; 22423312.
RA   Hubert N., Hanner R., Holm E., Mandrak N.E., Taylor E., Burridge M.,
RA   Watkinson D., Dumont P., Curry A., Bentzen P., Zhang J., April J.,
RA   Bernatchez L.;
RT   "Identifying Canadian Freshwater Fishes through DNA Barcodes";
RL   PLoS One 3(6):e2490-e2490(2008).
XX
RN   [2]
RP   1-652
RA   Hubert N., Zhang J., April J., Bernatchez L., Hanner R., Holm E.,
RA   Mandrak N.E., Taylor E., Burridge M., Watkinson D., Curry A., Bentzen P.;
RT   ;
RL   Submitted (25-FEB-2008) to the INSDC.
RL   Biodiversity Institute of Ontario, University of Guelph, 579 Gordon Street,
RL   Guelph, Ontario N1G 2W1, Canada
XX
DR   MD5; 54ae0edf0da895359f345bf1c61587c9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..652
FT                   /organism="Cottus rhotheus"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="Canada"
FT                   /specimen_voucher="BIOUG<CAN>:BCF-674-1"
FT                   /PCR_primers="fwd_name: C_VF1LFt1, fwd_seq:
FT                   tgtaaaacgacggccagttctcaaccaaccacaaagacattgg, fwd_seq:
FT                   tgtaaaacgacggccagttctcaaccaaccacaargayatygg, fwd_seq:
FT                   tgtaaaacgacggccagtattcaaccaatcataaagatattgg, fwd_seq:
FT                   tgtaaaacgacggccagttctcaaccaacca<i>aa<i>ga<i>at<i>gg,
FT                   rev_name: C_VR1LRt1, rev_seq:
FT                   caggaaacagctatgactagacttctgggtggccraaraayca, rev_seq:
FT                   caggaaacagctatgactagacttctgggtggccaaagaatca, rev_seq:
FT                   caggaaacagctatgactaaacttctggatgtccaaaaaatca, rev_seq:
FT                   caggaaacagctatgactagacttctgggtg<i>cc<i>aa<i>aa<i>ca"
FT                   /PCR_primers="fwd_name: C_FishF1t1, fwd_seq:
FT                   tgtaaaacgacggccagtcaaccaaccacaaagacattggcac, fwd_seq:
FT                   tgtaaaacgacggccagtcgactaatcataaagatatcggcac, rev_name:
FT                   C_FishR1t1, rev_seq:
FT                   caggaaacagctatgacacttcagggtgaccgaagaatcagaa, rev_seq:
FT                   caggaaacagctatgacacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:214921"
FT                   /bio_material="UOG:BIO:BCF-674-1"
FT   gene            <1..>652
FT                   /gene="COI"
FT   CDS             <1..>652
FT                   /codon_start=2
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit I"
FT                   /db_xref="GOA:B2LI81"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:B2LI81"
FT                   /protein_id="ACC92042.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHL"
XX
SQ   Sequence 652 BP; 147 A; 197 C; 119 G; 189 T; 0 other;
     cctatatcta gtatttggtg cttgagccgg aatagtaggc acagctttaa gcctcctaat        60
     tcgagcagaa ctaagccaac ccggcgccct cttgggggac gaccagattt ataatgtaat       120
     tgttacagcc catgctttcg taataatttt ctttatagta ataccaatta tgatcggagg       180
     tttcgggaac tgactcgttc ccctaatgat tggcgctcct gatatggcct ttcctcgaat       240
     gaataatatg agcttttgac ttcttccccc atctttttta ctcctccttg cctcttcggg       300
     agtcgaagca ggggccggaa ccggatgaac agtctacccg cccctcgccg gaaatctcgc       360
     ccacgcagga gcctctgttg acctaacaat cttttccctt cacctagcag gtatctcctc       420
     tattcttgga gcaatcaact ttatcacaac tattattaac atgaagcccc ctgctatctc       480
     acaataccag accccgctct ttgtatgatc tgttcttatt actgccgtcc tactgctcct       540
     ttccctcccc gttcttgccg ccggcatcac aatactcctg acagaccgaa accttaacac       600
     caccttcttt gaccctgccg ggggagggga cccaatcctt taccaacatc tc               652
//