ID DS485985; SV 1; linear; genomic DNA; CON; INV; 1006 BP. XX AC DS485985; XX PR Project:PRJNA13812; XX DT 13-DEC-2023 (Created) DT 13-DEC-2023 (Last updated) XX DE Drosophila melanogaster 211000022278718 sequence. XX KW . XX OS Drosophila melanogaster OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; OC Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; OC Drosophilidae; Drosophila; Sophophora. XX RN [1] RP 1-1006 RX PUBMED; 10731132. RA Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., RA Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., RA George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., RA Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C., RA Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., RA Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., RA An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., RA Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., RA Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., RA Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., RA Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., RA Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., RA Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., RA Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., RA Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., RA Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., RA Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., RA Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., RA Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., RA Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., RA Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., RA McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., RA Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., RA Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., RA Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., RA Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., RA Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., RA Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., RA Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., RA Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., RA Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., RA Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., RA Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.; RT "The genome sequence of Drosophila melanogaster"; RL Science 287(5461):2185-2195(2000). XX RN [2] RP 1-1006 RX PUBMED; 12537568. RA Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., RA Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., RA George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., RA Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J., RA Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., RA Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.; RT "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster RT euchromatic genome sequence"; RL Genome Biol. 3(12):RESEARCH0079(2002). XX RN [3] RP 1-1006 RX PUBMED; 12537572. RA Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., RA Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., RA Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P., RA Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A., Harris N.L., RA Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., RA Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.; RT "Annotation of the Drosophila melanogaster euchromatic genome: a systematic RT review"; RL Genome Biol. 3(12):RESEARCH0083(2002). XX RN [4] RP 1-1006 RX PUBMED; 12537573. RA Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., RA Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., RA Celniker S.E.; RT "The transposable elements of the Drosophila melanogaster euchromatin: a RT genomics perspective"; RL Genome Biol. 3(12):RESEARCH0084(2002). XX RN [5] RP 1-1006 RX PUBMED; 12537574. RA Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., RA Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., RA Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., RA Karpen G.H.; RT "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly"; RL Genome Biol. 3(12):RESEARCH0085(2002). XX RN [6] RP 1-1006 RX PUBMED; 16110336. RA Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., RA Ashburner M., Anxolabehere D.; RT "Combined evidence annotation of transposable elements in genome RT sequences"; RL PLoS Comput Biol 1(2):166-175(2005). XX RN [7] RC Erratum:[Science. 2007 Sep 7;317(5843):1325] RP 1-1006 RX PUBMED; 17569856. RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.; RT "The Release 5.1 annotation of Drosophila melanogaster heterochromatin"; RL Science 316(5831):1586-1591(2007). XX RN [8] RP 1-1006 RX PUBMED; 17569867. RA Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., RA Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., RA Dimitri P., Karpen G.H., Celniker S.E.; RT "Sequence finishing and mapping of Drosophila melanogaster RT heterochromatin"; RL Science 316(5831):1625-1628(2007). XX RN [9] RP 1-1006 RX PUBMED; 25589440. RA Hoskins R.A., Carlson J.W., Wan K.H., Park S., Mendez I., Galle S.E., RA Booth B.W., Pfeiffer B.D., George R.A., Svirskas R., Krzywinski M., RA Schein J., Accardo M.C., Damia E., Messina G., Mendez-Lago M., RA de Pablos B., Demakova O.V., Andreyeva E.N., Boldyreva L.V., Marra M., RA Carvalho A.B., Dimitri P., Villasante A., Zhimulev I.F., Rubin G.M., RA Karpen G.H., Celniker S.E.; RT "The Release 6 reference sequence of the Drosophila melanogaster genome"; RL Genome Res 25(3):445-458(2015). XX RN [10] RC Publication Status: Online-Only RP 1-1006 RX PUBMED; 26109356. RG FlyBase Consortium RA Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B., St Pierre S.E., RA Zhou P., Schroeder A.J., Falls K., Emmert D.B., Russo S.M., Gelbart W.M.; RT "Gene Model Annotations for Drosophila melanogaster: The Rule-Benders"; RL G3 (Bethesda) 5(8):1737-1749(2015). XX RN [11] RC Publication Status: Online-Only RP 1-1006 RX PUBMED; 26109357. RG FlyBase Consortium RA Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B., St Pierre S.E., RA Gramates L.S., Zhou P., Schroeder A.J., Falls K., Strelets V., Russo S.M., RA Gelbart W.M.; RT "Gene Model Annotations for Drosophila melanogaster: Impact of RT High-Throughput Data"; RL G3 (Bethesda) 5(8):1721-1736(2015). XX RN [12] RP 1-1006 RG Berkeley Drosophila Genome Project RA Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., RA Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., RA Rubin G.; RT "Drosophila melanogaster release 4 sequence"; RL Unpublished. XX RN [13] RP 1-1006 RA Adams M.D., Celniker S.E., Gibbs R.A., Rubin G.M., Venter C.J.; RT ; RL Submitted (21-MAR-2000) to the INSDC. RL Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA XX RN [14] RP 1-1006 RG Drosophila Heterochromatin Genome Project RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.; RT ; RL Submitted (01-AUG-2006) to the INSDC. RL Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley RL National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, RL USA XX RN [15] RC Direct Submission RP 1-1006 RA Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., RA Svirskas R., Karpen G.; RT ; RL Submitted (10-AUG-2006) to the INSDC. RL Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, RL One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA XX RN [16] RC Direct Submission RP 1-1006 RA Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., RA Svirskas R., Rubin G.; RT ; RL Submitted (10-AUG-2006) to the INSDC. RL Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, RL One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA XX RN [17] RP 1-1006 RA Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., RA Svirskas R., Rubin G.; RT ; RL Submitted (30-JUL-2007) to the INSDC. RL Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, RL One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA XX RN [18] RP 1-1006 RG Drosophila Heterochromatin Genome Project RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.; RT ; RL Submitted (30-JUL-2007) to the INSDC. RL Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley RL National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, RL USA XX RN [19] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (31-JUL-2007) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [20] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (16-JAN-2014) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [21] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (08-OCT-2015) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [22] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (07-DEC-2016) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [23] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (24-MAY-2018) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [24] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (23-APR-2019) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [25] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (17-APR-2020) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [26] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (18-OCT-2022) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX RN [27] RP 1-1006 RG FlyBase RA ; RT ; RL Submitted (13-DEC-2023) to the INSDC. RL FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, RL Cambridge, MA 02138, USA XX DR BioSample; SAMN02803731. DR MD5; 29ad0b49139acb903f5f9e8734f9f38f. XX CC This is Release 6 of the Drosophila melanogaster genome, produced CC jointly by the Berkeley Drosophila Genome Project, Celera Genomics, CC and the Drosophila Heterochromatin Genome Project. The gene CC annotation is based on Release 6.54 provided by FlyBase. Additional CC information about this assembly and annotation can be found at CC http://www.fruitfly.org and http://flybase.org. CC CC ##Genome-Annotation-Data-START## CC Annotation Provider :: FlyBase CC Annotation Status :: Full annotation CC Annotation Version :: Release 6.54 CC URL :: http://flybase.org CC ##Genome-Annotation-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1006 FT /organism="Drosophila melanogaster" FT /chromosome="Un" FT /mol_type="genomic DNA" FT /note="genotype: y[1]; Gr22b[1] Gr22d[1] cn[1] FT CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] FT Rh6[1]" FT /db_xref="taxon:7227" XX