ID DQ079884; SV 1; circular; genomic DNA; STD; PHG; 5386 BP. XX AC DQ079884; XX DT 25-JAN-2006 (Rel. 86, Created) DT 28-FEB-2006 (Rel. 87, Last updated, Version 2) XX DE Coliphage NC1, complete genome. XX KW . XX OS Enterobacteria phage NC1 OC Viruses; Microviridae; Bullavirinae; Sinsheimervirus; OC unclassified Sinsheimervirus. XX RN [1] RP 1-5386 RX DOI; 10.1128/JB.188.3.1134-1142.2006. RX PUBMED; 16428417. RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT "Horizontal gene transfer and the evolution of microvirid coliphage RT genomes"; RL J. Bacteriol. 188(3):1134-1142(2006). XX RN [2] RP 1-5386 RA Rokyta D.R., Burch C.L., Caudle S.B., Wichman H.A.; RT ; RL Submitted (31-MAY-2005) to the INSDC. RL Biological Sciences, University of Idaho, PO Box 443051, Moscow, ID RL 83844-3051, USA XX DR MD5; a157b9b143e98ef56c5f1d501851c51f. XX FH Key Location/Qualifiers FH FT source 1..5386 FT /organism="Enterobacteria phage NC1" FT /mol_type="genomic DNA" FT /db_xref="taxon:338115" FT gene join(3981..5386,1..136) FT /gene="A" FT CDS join(3981..5386,1..136) FT /codon_start=1 FT /transl_table=11 FT /gene="A" FT /product="gpA" FT /note="Rf replication; viral strand synthesis" FT /db_xref="GOA:Q2LLX7" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:Q2LLX7" FT /protein_id="AAZ49104.1" FT /translation="MVRSYYPSECHADYFDFERIEALKPAIEACGISNLSQSPMLAFHK FT QMENRIKLLEEILSFRMQGVEFDNGDMYVDGHKVASDVRDEFVSVTEKLMDELAQSYNV FT LPQLDINNTIDHRPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRDEYNYPKKKGIKDE FT CSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD FT YFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPTGSVDPN FT FGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAV FT GFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMLTMTD FT LSMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTTNLLKFMRA FT SIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK" FT gene join(4497..5386,1..136) FT /gene="A*" FT CDS join(4497..5386,1..136) FT /codon_start=1 FT /transl_table=11 FT /gene="A*" FT /product="gpA*" FT /function="shuts off host DNA synthesis" FT /db_xref="GOA:Q2LLX6" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/TrEMBL:Q2LLX6" FT /protein_id="AAZ49105.1" FT /translation="MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNP FT NALRDYFRDIGRMVLAAEGRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPTG FT SVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKAT FT SYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKM FT LTMTDLSMECLIQLTKLGYDATPFNQILKQNAKREMRLRLAKVTVADVLAAQPVTTNLL FT KFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGG FT K" FT gene join(5075..5386,1..51) FT /gene="B" FT CDS join(5075..5386,1..51) FT /codon_start=1 FT /transl_table=11 FT /gene="B" FT /product="gpB" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LLX5" FT /db_xref="InterPro:IPR003513" FT /db_xref="InterPro:IPR038149" FT /db_xref="UniProtKB/TrEMBL:Q2LLX5" FT /protein_id="AAZ49106.1" FT /translation="MEQLTKNQAVATSQEIIQNSNEPQLRDENAHNDRPVNGMLNPAYQ FT AGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQPA FT EFYRFHDAEVNTFGYF" FT gene 51..221 FT /gene="K" FT CDS 51..221 FT /codon_start=1 FT /transl_table=11 FT /gene="K" FT /product="gpK" FT /db_xref="InterPro:IPR020962" FT /db_xref="UniProtKB/TrEMBL:Q2LLX4" FT /protein_id="AAZ49107.1" FT /translation="MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCD FT LSPSTNDSVKN" FT gene 133..393 FT /gene="C" FT CDS 133..393 FT /codon_start=1 FT /transl_table=11 FT /gene="C" FT /product="gpC" FT /note="DNA maturation" FT /db_xref="GOA:Q2LLX3" FT /db_xref="InterPro:IPR016407" FT /db_xref="UniProtKB/TrEMBL:Q2LLX3" FT /protein_id="AAZ49108.1" FT /translation="MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFV FT KDWFRYESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS" FT gene 390..848 FT /gene="D" FT CDS 390..848 FT /codon_start=1 FT /transl_table=11 FT /gene="D" FT /product="gpD" FT /note="capsid morphogenesis" FT /db_xref="GOA:Q2LLX2" FT /db_xref="InterPro:IPR004196" FT /db_xref="InterPro:IPR036632" FT /db_xref="UniProtKB/TrEMBL:Q2LLX2" FT /protein_id="AAZ49109.1" FT /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIA FT TDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFT FT ENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM" FT gene 568..843 FT /gene="E" FT CDS 568..843 FT /codon_start=1 FT /transl_table=11 FT /gene="E" FT /product="gpE" FT /note="cell lysis protein" FT /db_xref="GOA:Q2LLX1" FT /db_xref="InterPro:IPR007605" FT /db_xref="UniProtKB/TrEMBL:Q2LLX1" FT /protein_id="AAZ49110.1" FT /translation="MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALSLR FT KTLLMASSVRLRPLSCSRLPCVYAQETLMFLLTQKRTSAKNYAQKE" FT gene 848..964 FT /gene="J" FT CDS 848..964 FT /codon_start=1 FT /transl_table=11 FT /gene="J" FT /product="gpJ" FT /note="core protein; DNA condensation" FT /db_xref="GOA:Q2LLX0" FT /db_xref="InterPro:IPR006815" FT /db_xref="UniProtKB/TrEMBL:Q2LLX0" FT /protein_id="AAZ49111.1" FT /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" FT gene 1001..2284 FT /gene="F" FT CDS 1001..2284 FT /codon_start=1 FT /transl_table=11 FT /gene="F" FT /product="gpF" FT /note="major coat protein" FT /db_xref="GOA:Q2LLW9" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR037002" FT /db_xref="UniProtKB/TrEMBL:Q2LLW9" FT /protein_id="AAZ49112.1" FT /translation="MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMD FT AVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVDTTGYI FT DHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNQLNQDDARYGFRC FT CHLKNIWTAPLPPETKLSCQMTTSTTSIDIMGLQAAYANLHTDQEREYFMQRYRDVISS FT FGGKTSYDADNRPLLVMRSNFWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEH FT GTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDS FT SKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIHEPPSGDLQERVLIRHHDYDQCFQSVQ FT LLQWNSQVKFNVTVYRNLPTTRDSIMTS" FT gene 2395..2922 FT /gene="G" FT CDS 2395..2922 FT /codon_start=1 FT /transl_table=11 FT /gene="G" FT /product="gpG" FT /note="major spike protein" FT /db_xref="GOA:Q2LLW8" FT /db_xref="InterPro:IPR003515" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2LLW8" FT /protein_id="AAZ49113.1" FT /translation="MFQTFISCHNSNFFSDKLVASSVIPASLAPVLQTPKATSSTLYFD FT SLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLP FT NAYDVYPLDGRHNGGYYTVKDCVTIDVLPRTSGNNVYVGFMVWSNFTATKCRGLVSLNQ FT VIKEIICLQPLK" FT gene 2931..3917 FT /gene="H" FT CDS 2931..3917 FT /codon_start=1 FT /transl_table=11 FT /gene="H" FT /product="gpH" FT /note="minor spike protein" FT /db_xref="GOA:Q2LLW7" FT /db_xref="InterPro:IPR006777" FT /db_xref="UniProtKB/TrEMBL:Q2LLW7" FT /protein_id="AAZ49114.1" FT /translation="MFGAIAGGIASALAGGAMSKLFGGGQKAASGGIQGDVLATDNNTV FT GMGDAGIKSAIQGSNVPNPDEAAPNFVSGAIAKAGKGLLEGTLQAGTSAVSDKLLDLVG FT LGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSAGMVDAGFENQKELTKMQLDNQK FT EIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQ FT QQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAK FT DISNVVTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" XX SQ Sequence 5386 BP; 1302 A; 1157 C; 1258 G; 1669 T; 0 other; gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa 60 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac 120 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt 180 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag 240 tggcttaata tgcttggcac gttcgttaag gactggttta gatatgagtc gcattttgtt 300 cacggtagag attctcttgt tgacatttta aaagagcgtg gattactatc tgagtccgat 360 gctgttcaac cattaatagg taaaaaatca tgagtcaagt tactgaacaa tccgtacgtt 420 tccagaccgc gctggcctcc attaagttaa ttcaggcttc tgccgttttg gatttaaccg 480 aagatgattt cgattttctg acgagtaaca aggtttggat cgctactgac cgctctcgcg 540 ctcgtcgctg tgtagaggct tgcgtctatg gtacgttgga ctttgtggga taccctcgct 600 ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat cccgtcaaca 660 ttcaaacggc ctgtctcatc atggaaggcg ctgagtttac ggaaaacatt attaatggcg 720 tcgagcgtcc ggttaaggcc gctgagctgt tcgcgtttac cctgcgtgta cgcgcaggaa 780 acactgatgt tcttactgac gcagaagaga acgtccgcca aaaattacgc gcagaaggag 840 tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cccggtcgtc cgcagccgtt 900 gcgaggcact aaaggcaagc gcaaaggtgc tcgtctttgg tatgtaggcg gtcaacaatt 960 ttaattatag gggcttcggc cccttacttg aggataaatt atgtctaatg ttcaaactgg 1020 cgcagagcgc atgccgcatg acctttccca tcttggcttc cttgctggtc aaattggtcg 1080 tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga tggacgccgt 1140 gggcgctctc cgtctttctc cattgcgtcg tggtcttgct attgactcta ccgtagacat 1200 ttttactttt tatgtccctc atcgtcatgt ttatggtgaa cagtggatta agtttatgaa 1260 ggatggcgtt aatgccactc cgcttccgac tgttgacact actggttata ttgaccatgc 1320 cgcttttctt ggcacaatta accctgatac taataaaatt cctaagcatt tgtttcaggg 1380 ttatctgaat atctataaca actattttaa agcgccgtgg atgcctgacc gcactgaggc 1440 taaccccaat cagcttaatc aagatgatgc tcgttatggc ttccgttgct gccacctcaa 1500 aaacatttgg actgctccgc ttcctccaga gactaagctt tcttgccaaa tgacaacttc 1560 taccacgtct attgacatta tgggtctgca agctgcttat gctaatttgc atactgacca 1620 agaacgtgaa tatttcatgc agcgttaccg tgatgttatt tcttcatttg gaggtaaaac 1680 gtcttatgac gctgacaacc gtcctttact tgtcatgcgc tctaatttct gggcatctgg 1740 ctatgatgtt gatggaactg accaaacgtc gttaggccag ttttctggtc gtgttcaaca 1800 gacctataag cattctgtgc cgcgtttctt tgttcctgag cacggcacta tgtttactct 1860 tgcgctggtt cgtttcccgc ctacggcgac taaagagatt cagtacctca acgctaaagg 1920 tgctttgact tataccgata ttgctggcga ccctgccttg tatggcaatt tgccgccgcg 1980 tgaaatttct atgaaggatg ttttccgttc tggtgattcg tccaagaagt tcaagattgc 2040 tgagggtcaa tggtatcgct atgcgccgtc ttatgtttcc cctgcatatc acctccttga 2100 aggcttccca tttattcatg aaccgccttc cggtgatttg caagaacgtg tgcttattcg 2160 ccatcatgac tatgaccagt gtttccagtc tgttcagttg ttgcagtgga atagccaggt 2220 gaaatttaat gtgaccgttt atcgcaatct gccgactact cgcgactcaa tcatgacttc 2280 gtgataaaag attgagtgtg aggttataac gccgaagcgg taaaaatttt aatttttgcc 2340 gctgaggggt tgaccaagcg aagcgcggta ggttttctgc ttaggagttt aatcatgttt 2400 cagactttta tttcttgcca taattcaaac tttttttctg ataagctggt tgctagttct 2460 gttattccag cttctttagc acctgtttta cagacaccta aagctacatc gtcaacgtta 2520 tattttgata gtttgacggt taatgctggt aatggtggtt ttcttcattg cattcagatg 2580 gatacatctg tcaacgccgc taatcaggtt gtttctgttg gtgctgatat tgcttttgat 2640 gccgacccta aattttttgc ctgtttggtt cgctttgagt cttcttcggt tccgactacc 2700 ctcccgaatg cctatgatgt ttatcctttg gatggtcgcc ataatggtgg ttattatacc 2760 gttaaggact gtgtgactat tgacgtcctt ccccgtacgt cgggcaataa tgtttatgtt 2820 ggtttcatgg tttggtctaa ctttaccgct actaaatgcc gcggattggt ttcgctgaat 2880 caggttatta aagagattat ttgtcttcag ccacttaagt gaggtgattt atgtttggtg 2940 ctattgctgg cggtattgct tctgcccttg ctggcggcgc catgtctaaa ttgtttggag 3000 gcggtcaaaa agccgcctcc ggtggcattc aaggtgatgt gcttgctact gataacaata 3060 ctgtaggcat gggtgacgct ggtattaagt ctgctattca aggttctaat gttcctaacc 3120 ccgatgaggc tgcacctaat ttcgtttctg gtgctattgc taaagctggc aaaggacttc 3180 ttgaaggtac gttgcaagct ggcacttctg ccgtttctga taagttgctt gatttggttg 3240 gacttggtgg caagtctgcc gctgataaag ggaaagatac gcgtgattat cttgctgctg 3300 catttcctga gcttaatgct tgggagcgtg ctggtgctgg tgcttcctct gctggcatgg 3360 ttgacgccgg atttgagaat caaaaagagc ttactaaaat gcaattggac aatcagaaag 3420 agattgccga gatgcaaaat gagactcaaa aagagattgc tggcattcag tcggcgactt 3480 cacgtcagaa tacgaaagac caggtatatg cgcaaaatga gatgcttgct tatcaacaaa 3540 aagagtctac tgctcgcgtt gcttctatta tggaaaacac caatctttcc aagcaacagc 3600 aggtttctga gattatgcgc cagatgctta cacaggctca aacggctggt cagtatttta 3660 ccaatgacca aatcaaagaa atgactcgta aggttagcgc cgaagttgac ttggttcatc 3720 aacagacgca gaatcagcgg tatggttctt ctcatattgg tgctactgca aaggatattt 3780 ctaatgtcgt cactgatgct gcttctggtg tggttgatat ttttcatggt attgataaag 3840 ctgttgccga tacttggaac aatttctgga aagacggtaa agctgatggt attggctcta 3900 atttgtctag gaagtaaccg tcaggattga cacctctcta attgtatgat ttcatgcctc 3960 caaatcttgg aggctttttt atggttcgtt cttattaccc ttctgaatgt cacgcagatt 4020 attttgactt tgagcgcatc gaggctctta aacctgccat cgaggcctgt ggcatttcta 4080 atctttccca atctccgatg cttgcctttc ataagcagat ggaaaaccgc atcaagctct 4140 tggaagagat tttgtcattt cgtatgcagg gcgttgagtt cgataatggt gatatgtatg 4200 tcgacggtca taaggttgct tctgatgttc gtgatgagtt tgtatctgtt actgaaaagt 4260 taatggatga actggcacaa tcttacaacg tgctccccca acttgatatt aataacacta 4320 tagaccaccg ccccgaaggg gacgaaaaat ggtttttaga gaacgagaag acggttactc 4380 agttttgccg caagctggct gctgaacgcc ctcttaagga tattcgcgat gagtataatt 4440 accccaaaaa gaaaggtatt aaggatgagt gttcaagatt gctggaggcc tccactatga 4500 aatcgcgtag aggctttact attcagcgtt tgatgaatgc aatgcgacag gctcatgctg 4560 atggttggtt tatcgttttt gacactctca cgttggctga cgaccgatta gaggcgtttt 4620 atgataatcc caatgctttg cgtgactatt ttcgtgatat tggtcgtatg gttcttgctg 4680 ccgagggtcg caaggctaat gattcacatg ccgactgcta tcagtatttt tgtgtgcctg 4740 agtatggtac agctaatggc cgtcttcatt tccatgcggt gcactttatg cggacacttc 4800 ctacaggtag cgttgaccct aattttggtc gtcgggtacg caatcgccgc cagttaaata 4860 gcttgcaaaa tacgtggcct tatggttaca gtatgcctat cgcagttcgc tacacgcagg 4920 acgctttttc acgttctgga tggttgtggc ctgttgatgc taaaggtgag ccgcttaaag 4980 ctaccagtta catggctgtt ggcttctatg tggctaaata cgttaacaaa aagtcagata 5040 tggaccttgc cgctaaaggt ctaggagcta aagaatggaa caactcacta aaaaccaagc 5100 tgtcgctact tcccaagaaa ttattcagaa ttcgaatgag ccgcaacttc gggatgaaaa 5160 tgctcacaat gaccgacctg tcaatggaat gcttaatcca gcttaccaag ctgggttacg 5220 acgcgacgcc gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc 5280 tggcaaaagt tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca 5340 aatttatgcg cgcttcgata aaaatgattg gcgtatccaa cctgca 5386 //