ID   CM129947; SV 1; circular; genomic DNA; CON; XXX; 3024562 BP.
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AC   CM129947; JBRUSZ010000000;
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PR   Project:PRJNA1286777;
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DT   27-OCT-2025 (Created)
DT   27-OCT-2025 (Last updated)
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DE   Vibrio cholerae strain NOVC08 chromosome 1, complete sequence, whole genome
DE   shotgun sequence.
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KW   WGS.
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OS   Vibrio cholerae
OC   Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales;
OC   Vibrionaceae; Vibrio.
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RN   [1]
RP   1-3024562
RA   Zhao N.;
RT   ;
RL   Submitted (29-JUL-2025) to the INSDC.
RL   Microbiology Laboratory, Nanjing Municipal Center for Disease Control and
RL   Prevention, No. 2 Zizhu Forest, Nanjing 210003, China
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DR   BioSample; SAMN49797550.
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CC   The annotation was added by the NCBI Prokaryotic Genome Annotation
CC   Pipeline (PGAP). Information about PGAP can be found here:
CC   https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
CC   
CC   ##Genome-Assembly-Data-START##
CC   Assembly Method        :: Unicycler v. 0.4.8
CC   Genome Representation  :: Full
CC   Expected Final Version :: Yes
CC   Genome Coverage        :: 640.93x
CC   Sequencing Technology  :: Illumina MiSeq; Oxford Nanopore MinION
CC   ##Genome-Assembly-Data-END##
CC   
CC   ##Genome-Annotation-Data-START##
CC   Annotation Provider               :: NCBI
CC   Annotation Date                   :: 10/22/2025 07:13:55
CC   Annotation Pipeline               :: NCBI Prokaryotic Genome
CC   Annotation Pipeline (PGAP)
CC   Annotation Method                 :: Best-placed reference protein
CC   set; GeneMarkS-2+
CC   Annotation Software revision      :: 6.10
CC   Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
CC   Genes (total)                     :: 3,962
CC   CDSs (total)                      :: 3,823
CC   Genes (coding)                    :: 3,731
CC   CDSs (with protein)               :: 3,731
CC   Genes (RNA)                       :: 139
CC   rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
CC   complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
CC   tRNAs                             :: 104
CC   ncRNAs                            :: 4
CC   Pseudo Genes (total)              :: 92
CC   CDSs (without protein)            :: 92
CC   Pseudo Genes (ambiguous residues) :: 0 of 92
CC   Pseudo Genes (frameshifted)       :: 29 of 92
CC   Pseudo Genes (incomplete)         :: 61 of 92
CC   Pseudo Genes (internal stop)      :: 15 of 92
CC   Pseudo Genes (multiple problems)  :: 11 of 92
CC   CRISPR Arrays                     :: 3
CC   ##Genome-Annotation-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..3024562
FT                   /organism="Vibrio cholerae"
FT                   /chromosome="1"
FT                   /strain="NOVC08"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="China: Nanjing"
FT                   /isolation_source="environment"
FT                   /collected_by="Nanjing Municipal Center for Disease Control
FT                   and Prevention"
FT                   /collection_date="2023-05-08"
FT                   /note="serogroup: non-O1/non-O139"
FT                   /db_xref="taxon:666"
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CO   join(JBRUSZ010000001.1:1..3024562)
//