ID   CM104661; SV 1; linear; genomic DNA; CON; XXX; 149693834 BP.
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AC   CM104661; JAJQWJ020000000;
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PR   Project:PRJNA785144;
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DT   06-FEB-2025 (Created)
DT   06-FEB-2025 (Last updated)
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DE   Phaethornis superciliosus isolate PSU5 chromosome 2, whole genome shotgun
DE   sequence.
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KW   WGS.
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OS   Phaethornis superciliosus
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC   Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes;
OC   Trochilidae; Phaethornis.
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RN   [1]
RP   1-149693834
RX   PUBMED; 36634192.
RA   Osipova E., Barsacchi R., Brown T., Sadanandan K., Gaede A.H., Monte A.,
RA   Jarrells J., Moebius C., Pippel M., Altshuler D.L., Winkler S., Bickle M.,
RA   Baldwin M.W., Hiller M.;
RT   "Loss of a gluconeogenic muscle enzyme contributed to adaptive metabolic
RT   traits in hummingbirds";
RL   Science 379(6628):185-190(2023).
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RN   [2]
RP   1-149693834
RA   Osipova E., Barsacchi R., Brown T., Sadanandan K., Gaede A.H., Monte A.,
RA   Altshuler D.L., Pippel M., Winkler S., Bickle M., Baldwin M.W., Hiller M.;
RT   ;
RL   Submitted (02-DEC-2021) to the INSDC.
RL   Long Read DNA Sequencing, The Max Planck Institute of Molecular Cell
RL   Biology and Genetics, Pfotenhauerstrasse 108, Dresden 01307, Germany
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RN   [3]
RP   1-149693834
RA   Osipova E., Barsacchi R., Brown T., Sadanandan K., Gaede A.H., Monte A.,
RA   Altshuler D.L., Pippel M., Winkler S., Bickle M., Baldwin M.W., Collins J.,
RA   Sims Y., Balacco J., Formenti G., Jarvis E.D., Hiller M.;
RT   ;
RL   Submitted (08-NOV-2024) to the INSDC.
RL   Vertebrate Genomes Project, G10K, 1230 York Avenue, New York, NY 10065, USA
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DR   BioSample; SAMN23532249.
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CC   ##Genome-Assembly-Data-START##
CC   Assembly Date          :: 23-JUN-2024
CC   Assembly Method        :: FALCON v. falcon-kit 1.8.1; Falcon Unzip
CC   v. 1.3.7; purge_dups v. 1.2.3; scaff10x
CC   v. 4.2; LongRanger v. 2.2.2; Bionano
CC   Solve v. 3.5.1; salsa2 v. 2.2; pbmm2 v.
CC   1.3.0; freebayes v. 1.3.2; bwa v.
CC   0.7.17-r1188; gcpp v. 2.0.2; bcftools v.
CC   1.2-21-ga865a16
CC   Assembly Name          :: bPhaSup1.pri
CC   Diploid                :: Principal Haplotype
CC   Genome Representation  :: Full
CC   Expected Final Version :: No
CC   Genome Coverage        :: 85.0x
CC   Sequencing Technology  :: PacBio Sequel II CLR; 10X Genomics linked
CC   reads; Arima Genomics Hi-C (v2); Bionano
CC   Genomics DLS
CC   ##Genome-Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..149693834
FT                   /organism="Phaethornis superciliosus"
FT                   /chromosome="2"
FT                   /isolate="PSU5"
FT                   /mol_type="genomic DNA"
FT                   /geo_loc_name="Brazil: Gunma Ecological Park"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /tissue_type="brain"
FT                   /db_xref="taxon:46513"
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CO   join(JAJQWJ020000002.1:1..149693834)
//