ID   CM000227; SV 1; linear; genomic DNA; CON; MUS; 60529439 BP.
XX
AC   CM000227;
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PR   Project:PRJNA11785;
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DT   22-SEP-2006 (Rel. 89, Created)
DT   27-JUN-2007 (Rel. 92, Last updated, Version 4)
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DE   Mus musculus chromosome 19, whole genome shotgun sequence.
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KW   .
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
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RN   [1]
RC   Erratum:[Science 2002 Aug 23;297(5585):1278]
RP   1-60529439
RX   DOI; 10.1126/science.1069193.
RX   PUBMED; 12040188.
RA   Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R.,
RA   Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A.,
RA   Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.,
RA   Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R.,
RA   Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q.,
RA   Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M.,
RA   Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R.,
RA   Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H.,
RA   Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z.,
RA   Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R.,
RA   Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L.,
RA   Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M.,
RA   Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H.,
RA   Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A.,
RA   Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H.,
RA   Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D.,
RA   Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A.,
RA   Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B.,
RA   Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R.,
RA   Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J.,
RA   Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S.,
RA   MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L.,
RA   Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A.,
RA   Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S.,
RA   Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R.,
RA   Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E.,
RA   Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G.,
RA   Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J.,
RA   Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C.,
RA   Pfannkoch C.M., Barnstead M., Stephenson L.D.;
RT   "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the
RT   human genome";
RL   Science, e1252229 296(5573):1661-1671(2002).
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RN   [2]
RP   1-60529439
RA   Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.;
RT   ;
RL   Submitted (05-JUL-2005) to the INSDC.
RL   Celera Genomics, 45 W. Gude Dr., Rockville, MD 20850, USA
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DR   MD5; a1570f563eeb9a9f2a8acc8452f53f8c.
DR   ENA; AAHY01000000; SET.
DR   ENA; AAHY00000000; SET.
DR   BioSample; SAMN03004379.
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CC   This is the July 2001 combined whole genome shotgun assembly of Mus
CC   musculus. It contains 27 million Celera reads on four Mus musculus
CC   strains (129X1/SvJ, 129S1/SvImJ, DBA/2J and A/J), 13 million reads
CC   on C57BL/6 from the NCBI Trace Archive, 0.4 million BAC end
CC   sequences from TIGR, and unfinished and finished BACs pulled from
CC   NCBI (Nature 2002. 420:520-562). The assembly process relied on
CC   Celera's paired reads and BAC end reads for long range order and
CC   orientation. Its scaffolds were mapped to chromosomes using STS
CC   maps. For more detailed information about whole genome sequencing
CC   and Celera's assembly process, please refer to Venter, J.C. et al.
CC   Science 2001. 291:1304-1351.
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FH   Key             Location/Qualifiers
FH
FT   source          1..60529439
FT                   /organism="Mus musculus"
FT                   /chromosome="19"
FT                   /strain="mixed"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10090"
FT   assembly_gap    6250013..6518072
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    6530459..6798518
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    6801071..7069130
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    7070523..7338582
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    48705566..48973625
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    49002000..49270059
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    49288913..49556972
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    49558825..49826884
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
FT   assembly_gap    49828567..50096626
FT                   /estimated_length=268060
FT                   /gap_type="unknown"
XX
CO   join(CH466612.1:1..6250012,gap(268060),CH466780.1:1..12386,gap(268060),
CO   DS033371.1:1..2552,gap(268060),DS033429.1:1..1392,gap(268060),
CO   CH466534.1:1..41366983,gap(268060),CH466723.1:1..28374,gap(268060),
CO   DS033271.1:1..18853,gap(268060),complement(DS033399.1:1..1852),gap(268060),
CO   DS033405.1:1..1682,gap(268060),CH466585.1:1..10432813)
//