ID CM000194; SV 7; linear; genomic DNA; CON; MAM; 66346785 BP. XX AC CM000194; AAFC05000000; XX PR Project:PRJNA12555; XX DT 02-JUL-2005 (Rel. 84, Created) DT 23-NOV-2015 (Rel. 127, Last updated, Version 8) XX DE Bos taurus breed Hereford chromosome 18, whole genome shotgun sequence. XX KW . XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-66346785 RX DOI; 10.1126/science.1169588. RX PUBMED; 19390049. RG Bovine Genome Sequencing and Analysis Consortium RA Elsik C.G., Tellam R.L., Worley K.C., Gibbs R.A., Muzny D.M., RA Weinstock G.M., Adelson D.L., Eichler E.E., Elnitski L., Guigo R., RA Hamernik D.L., Kappes S.M., Lewin H.A., Lynn D.J., Nicholas F.W., RA Reymond A., Rijnkels M., Skow L.C., Zdobnov E.M., Schook L., Womack J., RA Alioto T., Antonarakis S.E., Astashyn A., Chapple C.E., Chen H.C., RA Chrast J., Camara F., Ermolaeva O., Henrichsen C.N., Hlavina W., RA Kapustin Y., Kiryutin B., Kitts P., Kokocinski F., Landrum M., Maglott D., RA Pruitt K., Sapojnikov V., Searle S.M., Solovyev V., Souvorov A., Ucla C., RA Wyss C., Anzola J.M., Gerlach D., Elhaik E., Graur D., Reese J.T., RA Edgar R.C., McEwan J.C., Payne G.M., Raison J.M., Junier T., RA Kriventseva E.V., Eyras E., Plass M., Donthu R., Larkin D.M., Reecy J., RA Yang M.Q., Chen L., Cheng Z., Chitko-McKown C.G., Liu G.E., RA Matukumalli L.K., Song J., Zhu B., Bradley D.G., Brinkman F.S., Lau L.P., RA Whiteside M.D., Walker A., Wheeler T.T., Casey T., German J.B., Lemay D.G., RA Maqbool N.J., Molenaar A.J., Seo S., Stothard P., Baldwin C.L., Baxter R., RA Brinkmeyer-Langford C.L., Brown W.C., Childers C.P., Connelley T., RA Ellis S.A., Fritz K., Glass E.J., Herzig C.T., Iivanainen A., Lahmers K.K., RA Bennett A.K., Dickens C.M., Gilbert J.G., Hagen D.E., Salih H., Aerts J., RA Caetano A.R., Dalrymple B., Garcia J.F., Gill C.A., Hiendleder S.G., RA Memili E., Spurlock D., Williams J.L., Alexander L., Brownstein M.J., RA Guan L., Holt R.A., Jones S.J., Marra M.A., Moore R., Moore S.S., RA Roberts A., Taniguchi M., Waterman R.C., Chacko J., Chandrabose M.M., RA Cree A., Dao M.D., Dinh H.H., Gabisi R.A., Hines S., Hume J., RA Jhangiani S.N., Joshi V., Kovar C.L., Lewis L.R., Liu Y.S., Lopez J., RA Morgan M.B., Nguyen N.B., Okwuonu G.O., Ruiz S.J., Santibanez J., RA Wright R.A., Buhay C., Ding Y., Dugan-Rocha S., Herdandez J., Holder M., RA Sabo A., Egan A., Goodell J., Wilczek-Boney K., Fowler G.R., Hitchens M.E., RA Lozado R.J., Moen C., Steffen D., Warren J.T., Zhang J., Chiu R., RA Schein J.E., Durbin K.J., Havlak P., Jiang H., Liu Y., Qin X., Ren Y., RA Shen Y., Song H., Bell S.N., Davis C., Johnson A.J., Lee S., Nazareth L.V., RA Patel B.M., Pu L.L., Vattathil S., Williams R.L.Jr., Curry S., Hamilton C., RA Sodergren E., Wheeler D.A., Barris W., Bennett G.L., Eggen A., Green R.D., RA Harhay G.P., Hobbs M., Jann O., Keele J.W., Kent M.P., Lien S., McKay S.D., RA McWilliam S., Ratnakumar A., Schnabel R.D., Smith T., Snelling W.M., RA Sonstegard T.S., Stone R.T., Sugimoto Y., Takasuga A., Taylor J.F., RA Van Tassell C.P., Macneil M.D., Abatepaulo A.R., Abbey C.A., Ahola V., RA Almeida I.G., Amadio A.F., Anatriello E., Bahadue S.M., Biase F.H., RA Boldt C.R., Carroll J.A., Carvalho W.A., Cervelatti E.P., Chacko E., RA Chapin J.E., Cheng Y., Choi J., Colley A.J., de Campos T.A., De Donato M., RA Santos I.K., de Oliveira C.J., Deobald H., Devinoy E., Donohue K.E., RA Dovc P., Eberlein A., Fitzsimmons C.J., Franzin A.M., Garcia G.R., RA Genini S., Gladney C.J., Grant J.R., Greaser M.L., Green J.A., RA Hadsell D.L., Hakimov H.A., Halgren R., Harrow J.L., Hart E.A., RA Hastings N., Hernandez M., Hu Z.L., Ingham A., Iso-Touru T., Jamis C., RA Jensen K., Kapetis D., Kerr T., Khalil S.S., Khatib H., Kolbehdari D., RA Kumar C.G., Kumar D., Leach R., Lee J.C., Li C., Logan K.M., Malinverni R., RA Marques E., Martin W.F., Martins N.F., Maruyama S.R., Mazza R., RA McLean K.L., Medrano J.F., Moreno B.T., More D.D., Muntean C.T., RA Nandakumar H.P., Nogueira M.F., Olsaker I., Pant S.D., Panzitta F., RA Pastor R.C., Poli M.A., Poslusny N., Rachagani S., Ranganathan S., RA Razpet A., Riggs P.K., Rincon G., Rodriguez-Osorio N., Rodriguez-Zas S.L., RA Romero N.E., Rosenwald A., Sando L., Schmutz S.M., Shen L., Sherman L., RA Southey B.R., Lutzow Y.S., Sweedler J.V., Tammen I., Telugu B.P., RA Urbanski J.M., Utsunomiya Y.T., Verschoor C.P., Waardenberg A.J., Wang Z., RA Ward R., Weikard R., Welsh T.H.Jr., White S.N., Wilming L.G., RA Wunderlich K.R., Yang J., Zhao F.Q.; RT "The genome sequence of taurine cattle: a window to ruminant biology and RT evolution"; RL Science, e1252229 324(5926):522-528(2009). XX RN [2] RP 1-66346785 RA Murali S.C., Liu Y., Qin X., Wang M., Skinner E., Vee V., Smith T., RA Schwartz D.C., Zhou S., English A., Han Y., Doddapaneni H.V., Muzny D., RA Gibbs R.A., Worley K.C.; RT "Bovine genome assembly by Cattle Genome Sequencing International RT Consortium"; RL Unpublished. XX RN [3] RC Contact ncbi-contacts@bcm.tmc.edu for more information. RP 1-66346785 RG Bovine Sequencing Consortium RA ; RT ; RL Submitted (28-SEP-2004) to the INSDC. RL Human Genome Sequencing Center, Department of Molecular and Human Genetics, RL Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA XX RN [4] RP 1-66346785 RA Murali S.C., Liu Y., Qin X., Wang M., Skinner E., Vee V., Smith T., RA Schwartz D.C., Zhou S., English A., Han Y., Doddapaneni H.V., Muzny D., RA Gibbs R.A., Worley K.C.; RT ; RL Submitted (09-NOV-2015) to the INSDC. RL Human Genome Sequencing Center, Department of Molecular and Human Genetics, RL Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA XX DR MD5; bbb8dc20d45b9467df3a9960e5004bab. DR ENA; AAFC05000000; SET. DR ENA; AAFC00000000; SET. DR BioSample; SAMN02898106. DR EuropePMC; PMC2753619; 19725965. XX CC On Nov 19, 2015 this sequence version replaced gi:931356120. CC ##Genome-Assembly-Data-START## CC Assembly Date :: JUN-2015 CC Assembly Method :: UMD Overlapper v. 2009; additional CC processing + PBJelly2 v. 14.9.9 CC Assembly Name :: Btau_5.0.1 CC Genome Coverage :: 19.0x CC Sequencing Technology :: Sanger; PacBio RS II CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..66346785 FT /organism="Bos taurus" FT /chromosome="18" FT /mol_type="genomic DNA" FT /sex="pooled male and female" FT /tissue_type="blood" FT /note="breed: Hereford" FT /db_xref="taxon:9913" FT assembly_gap 3227212..3227311 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 3245001..3245100 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 11472111..11472210 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 11473889..11473988 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 11476510..11476609 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 11481426..11481525 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 42998560..42998659 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 43000582..43000681 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 43005433..43005532 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 43009453..43009552 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 51240694..51240793 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 51246094..51246193 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 57874154..57874253 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 57889682..57889781 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 57972061..57972160 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 57978988..57979087 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 58236376..58236475 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 58242812..58242911 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 58254897..58254996 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 60117362..60117461 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 60377523..60377622 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 60524497..60524596 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 60525752..60525851 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 60802767..60802866 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 60807199..60807298 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61026922..61027021 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61089218..61089317 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61509909..61510008 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61522604..61522703 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61874546..61874645 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61877246..61877345 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61926976..61927075 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61944449..61944548 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61945609..61945708 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61970255..61970354 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61974719..61974818 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61982538..61982637 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61989419..61989518 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 61994839..61994938 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 62004808..62004907 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 62064214..62064313 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 62066011..62066110 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 62070655..62070754 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 62076809..62076908 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 62118193..62118292 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 62123360..62123459 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 63570705..63570804 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 63571752..63571851 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 63795413..63795512 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 63796503..63796602 FT /estimated_length=unknown FT /gap_type="between scaffolds" XX CO join(KQ559129.1:1..3227211,gap(unk100),KQ559130.1:1..17689,gap(unk100), CO KQ559131.1:1..8227010,gap(unk100),KQ559132.1:1..1678,gap(unk100), CO KQ559133.1:1..2521,gap(unk100),KQ559134.1:1..4816,gap(unk100), CO KQ559135.1:1..31517034,gap(unk100),KQ559136.1:1..1922,gap(unk100), CO KQ559137.1:1..4751,gap(unk100),KQ559138.1:1..3920,gap(unk100), CO KQ559139.1:1..8231141,gap(unk100),KQ559140.1:1..5300,gap(unk100), CO KQ559141.1:1..6627960,gap(unk100),KQ559142.1:1..15428,gap(unk100), CO KQ559143.1:1..82279,gap(unk100),KQ559144.1:1..6827,gap(unk100), CO KQ559145.1:1..257288,gap(unk100),KQ559146.1:1..6336,gap(unk100), CO KQ559147.1:1..11985,gap(unk100),KQ559148.1:1..1862365,gap(unk100), CO KQ559149.1:1..260061,gap(unk100),KQ559150.1:1..146874,gap(unk100), CO KQ559151.1:1..1155,gap(unk100),KQ559152.1:1..276915,gap(unk100), CO KQ559153.1:1..4332,gap(unk100),KQ559154.1:1..219623,gap(unk100), CO KQ559155.1:1..62196,gap(unk100),KQ559156.1:1..420591,gap(unk100), CO KQ559157.1:1..12595,gap(unk100),KQ559158.1:1..351842,gap(unk100), CO KQ559159.1:1..2600,gap(unk100),KQ559160.1:1..49630,gap(unk100), CO KQ559161.1:1..17373,gap(unk100),KQ559162.1:1..1060,gap(unk100), CO KQ559163.1:1..24546,gap(unk100),KQ559164.1:1..4364,gap(unk100), CO KQ559165.1:1..7719,gap(unk100),KQ559166.1:1..6781,gap(unk100), CO KQ559167.1:1..5320,gap(unk100),KQ559168.1:1..9869,gap(unk100), CO KQ559169.1:1..59306,gap(unk100),KQ559170.1:1..1697,gap(unk100), CO KQ559171.1:1..4544,gap(unk100),KQ559172.1:1..6054,gap(unk100), CO KQ559173.1:1..41284,gap(unk100),KQ559174.1:1..5067,gap(unk100), CO KQ559175.1:1..1447245,gap(unk100),KQ559176.1:1..947,gap(unk100), CO KQ559177.1:1..223561,gap(unk100),KQ559178.1:1..990,gap(unk100), CO KQ559179.1:1..2550183) //