ID CM000177; SV 6; linear; genomic DNA; CON; MAM; 158972876 BP. XX AC CM000177; AAFC05000000; XX PR Project:PRJNA12555; XX DT 04-JUL-2005 (Rel. 84, Created) DT 23-NOV-2015 (Rel. 127, Last updated, Version 8) XX DE Bos taurus breed Hereford chromosome 1, whole genome shotgun sequence. XX KW . XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-158972876 RX DOI; 10.1126/science.1169588. RX PUBMED; 19390049. RG Bovine Genome Sequencing and Analysis Consortium RA Elsik C.G., Tellam R.L., Worley K.C., Gibbs R.A., Muzny D.M., RA Weinstock G.M., Adelson D.L., Eichler E.E., Elnitski L., Guigo R., RA Hamernik D.L., Kappes S.M., Lewin H.A., Lynn D.J., Nicholas F.W., RA Reymond A., Rijnkels M., Skow L.C., Zdobnov E.M., Schook L., Womack J., RA Alioto T., Antonarakis S.E., Astashyn A., Chapple C.E., Chen H.C., RA Chrast J., Camara F., Ermolaeva O., Henrichsen C.N., Hlavina W., RA Kapustin Y., Kiryutin B., Kitts P., Kokocinski F., Landrum M., Maglott D., RA Pruitt K., Sapojnikov V., Searle S.M., Solovyev V., Souvorov A., Ucla C., RA Wyss C., Anzola J.M., Gerlach D., Elhaik E., Graur D., Reese J.T., RA Edgar R.C., McEwan J.C., Payne G.M., Raison J.M., Junier T., RA Kriventseva E.V., Eyras E., Plass M., Donthu R., Larkin D.M., Reecy J., RA Yang M.Q., Chen L., Cheng Z., Chitko-McKown C.G., Liu G.E., RA Matukumalli L.K., Song J., Zhu B., Bradley D.G., Brinkman F.S., Lau L.P., RA Whiteside M.D., Walker A., Wheeler T.T., Casey T., German J.B., Lemay D.G., RA Maqbool N.J., Molenaar A.J., Seo S., Stothard P., Baldwin C.L., Baxter R., RA Brinkmeyer-Langford C.L., Brown W.C., Childers C.P., Connelley T., RA Ellis S.A., Fritz K., Glass E.J., Herzig C.T., Iivanainen A., Lahmers K.K., RA Bennett A.K., Dickens C.M., Gilbert J.G., Hagen D.E., Salih H., Aerts J., RA Caetano A.R., Dalrymple B., Garcia J.F., Gill C.A., Hiendleder S.G., RA Memili E., Spurlock D., Williams J.L., Alexander L., Brownstein M.J., RA Guan L., Holt R.A., Jones S.J., Marra M.A., Moore R., Moore S.S., RA Roberts A., Taniguchi M., Waterman R.C., Chacko J., Chandrabose M.M., RA Cree A., Dao M.D., Dinh H.H., Gabisi R.A., Hines S., Hume J., RA Jhangiani S.N., Joshi V., Kovar C.L., Lewis L.R., Liu Y.S., Lopez J., RA Morgan M.B., Nguyen N.B., Okwuonu G.O., Ruiz S.J., Santibanez J., RA Wright R.A., Buhay C., Ding Y., Dugan-Rocha S., Herdandez J., Holder M., RA Sabo A., Egan A., Goodell J., Wilczek-Boney K., Fowler G.R., Hitchens M.E., RA Lozado R.J., Moen C., Steffen D., Warren J.T., Zhang J., Chiu R., RA Schein J.E., Durbin K.J., Havlak P., Jiang H., Liu Y., Qin X., Ren Y., RA Shen Y., Song H., Bell S.N., Davis C., Johnson A.J., Lee S., Nazareth L.V., RA Patel B.M., Pu L.L., Vattathil S., Williams R.L.Jr., Curry S., Hamilton C., RA Sodergren E., Wheeler D.A., Barris W., Bennett G.L., Eggen A., Green R.D., RA Harhay G.P., Hobbs M., Jann O., Keele J.W., Kent M.P., Lien S., McKay S.D., RA McWilliam S., Ratnakumar A., Schnabel R.D., Smith T., Snelling W.M., RA Sonstegard T.S., Stone R.T., Sugimoto Y., Takasuga A., Taylor J.F., RA Van Tassell C.P., Macneil M.D., Abatepaulo A.R., Abbey C.A., Ahola V., RA Almeida I.G., Amadio A.F., Anatriello E., Bahadue S.M., Biase F.H., RA Boldt C.R., Carroll J.A., Carvalho W.A., Cervelatti E.P., Chacko E., RA Chapin J.E., Cheng Y., Choi J., Colley A.J., de Campos T.A., De Donato M., RA Santos I.K., de Oliveira C.J., Deobald H., Devinoy E., Donohue K.E., RA Dovc P., Eberlein A., Fitzsimmons C.J., Franzin A.M., Garcia G.R., RA Genini S., Gladney C.J., Grant J.R., Greaser M.L., Green J.A., RA Hadsell D.L., Hakimov H.A., Halgren R., Harrow J.L., Hart E.A., RA Hastings N., Hernandez M., Hu Z.L., Ingham A., Iso-Touru T., Jamis C., RA Jensen K., Kapetis D., Kerr T., Khalil S.S., Khatib H., Kolbehdari D., RA Kumar C.G., Kumar D., Leach R., Lee J.C., Li C., Logan K.M., Malinverni R., RA Marques E., Martin W.F., Martins N.F., Maruyama S.R., Mazza R., RA McLean K.L., Medrano J.F., Moreno B.T., More D.D., Muntean C.T., RA Nandakumar H.P., Nogueira M.F., Olsaker I., Pant S.D., Panzitta F., RA Pastor R.C., Poli M.A., Poslusny N., Rachagani S., Ranganathan S., RA Razpet A., Riggs P.K., Rincon G., Rodriguez-Osorio N., Rodriguez-Zas S.L., RA Romero N.E., Rosenwald A., Sando L., Schmutz S.M., Shen L., Sherman L., RA Southey B.R., Lutzow Y.S., Sweedler J.V., Tammen I., Telugu B.P., RA Urbanski J.M., Utsunomiya Y.T., Verschoor C.P., Waardenberg A.J., Wang Z., RA Ward R., Weikard R., Welsh T.H.Jr., White S.N., Wilming L.G., RA Wunderlich K.R., Yang J., Zhao F.Q.; RT "The genome sequence of taurine cattle: a window to ruminant biology and RT evolution"; RL Science, e1252229 324(5926):522-528(2009). XX RN [2] RP 1-158972876 RA Murali S.C., Liu Y., Qin X., Wang M., Skinner E., Vee V., Smith T., RA Schwartz D.C., Zhou S., English A., Han Y., Doddapaneni H.V., Muzny D., RA Gibbs R.A., Worley K.C.; RT "Bovine genome assembly by Cattle Genome Sequencing International RT Consortium"; RL Unpublished. XX RN [3] RC Contact ncbi-contacts@bcm.tmc.edu for more information. RP 1-158972876 RG Bovine Sequencing Consortium RA ; RT ; RL Submitted (28-SEP-2004) to the INSDC. RL Human Genome Sequencing Center, Department of Molecular and Human Genetics, RL Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA XX RN [4] RP 1-158972876 RA Murali S.C., Liu Y., Qin X., Wang M., Skinner E., Vee V., Smith T., RA Schwartz D.C., Zhou S., English A., Han Y., Doddapaneni H.V., Muzny D., RA Gibbs R.A., Worley K.C.; RT ; RL Submitted (09-NOV-2015) to the INSDC. RL Human Genome Sequencing Center, Department of Molecular and Human Genetics, RL Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA XX DR MD5; 93fca5d10388e0105e120adbaf2cf519. DR ENA; AAFC05000000; SET. DR ENA; AAFC00000000; SET. DR BioSample; SAMN02898106. DR EuropePMC; PMC2374996; 17697342. DR EuropePMC; PMC2943200; 19390049. XX CC On Sep 30, 2015 this sequence version replaced gi:346683426. CC ##Genome-Assembly-Data-START## CC Assembly Date :: JUN-2015 CC Assembly Method :: UMD Overlapper v. 2009; additional CC processing + PBJelly2 v. 14.9.9 CC Assembly Name :: Btau_5.0.1 CC Genome Coverage :: 19.0x CC Sequencing Technology :: Sanger; PacBio RS II CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..158972876 FT /organism="Bos taurus" FT /chromosome="1" FT /mol_type="genomic DNA" FT /sex="pooled male and female" FT /tissue_type="blood" FT /note="breed: Hereford" FT /db_xref="taxon:9913" FT assembly_gap 55412..55511 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 63330..63429 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 74841..74940 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 3727974..3728073 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT assembly_gap 6753110..6753209 FT /estimated_length=unknown FT /gap_type="between scaffolds" FT 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