ID CM000080; SV 5; linear; genomic DNA; CON; ROD; 122095297 BP. XX AC CM000080; AABR07000000; XX PR Project:PRJNA10629; XX DT 14-DEC-2004 (Rel. 82, Created) DT 04-JUL-2014 (Rel. 121, Last updated, Version 7) XX DE Rattus norvegicus strain mixed chromosome 9, whole genome shotgun sequence. XX KW . XX OS Rattus norvegicus (Norway rat) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Rattus. XX RN [1] RP 1-122095297 RX DOI; 10.1038/nature02426. RX PUBMED; 15057822. RG Rat Genome Sequencing Project Consortium RA Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., RA Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., RA Hines S., Lewis L., DeRamo C., Delgado O., Dugan-Rocha S., Miner G., RA Morgan M., Hawes A., Gill R., Celera, Holt R.A., Adams M.D., RA Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., RA Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., RA Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., RA Smith D., Lee H.M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., RA Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., RA Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., RA Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., RA Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., RA Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., RA Chen R., Durbin K.J., Egan A., Ren Y., Song X.Z., Li B., Liu Y., Qin X., RA Cawley S., Worley K.C., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., RA Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., RA Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., RA Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., RA Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., RA Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., RA Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., RA Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., RA Hubner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.A., RA Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., RA Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., RA Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., RA Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., RA Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., RA Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., RA Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., RA Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., RA Durbin R., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., RA Sidow A., Stone E.A., Venter J.C., Payseur B.A., Bourque G., Lopez-Otin C., RA Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., RA Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., RA Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., RA Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., RA Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., RA Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., RA Felsenfeld A., Old S., Mockrin S., Collins F.; RT "Genome sequence of the Brown Norway rat yields insights into mammalian RT evolution"; RL Nature 428(6982):493-521(2004). XX RN [2] RP 1-122095297 RA Liu Y., Hughes D.S., Murali S.C., Qin X., Vee V., Wang M., Gnanaolivu R., RA Han Y., Kalra D., English A., Worley K., Muzny D., Gibbs R.; RT "Genome sequencing by Rat Genome Sequencing Consortium"; RL Unpublished. XX RN [3] RP 1-122095297 RG Rat Genome Sequencing Consortium RA Liu Y., Hughes D.S., Murali S.C., Qin X., Vee V., Wang M., Gnanaolivu R., RA Han Y., Kalra D., English A.C., Worley K., Muzny D., Gibbs R.; RT ; RL Submitted (25-JUN-2014) to the INSDC. RL Human Genome Sequencing Center, Department of Molecular and Human Genetics, RL Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA XX DR MD5; e9cf5849b048f580eb3a23eb1839c2ec. DR ENA; AABR07000000; SET. DR ENA; AABR00000000; SET. DR BioSample; SAMN02808228. DR Ensembl-Scaffolds; 9:1-122095297; rattus_norvegicus. XX CC On Jul 1, 2014 this sequence version replaced gi:380690188. CC ##Genome-Assembly-Data-START## CC Assembly Date :: MAY-2014 CC Assembly Method :: Atlas Assembly suite v. 2.0; CLCbio v. CC 1.0; Velvet v. 1.0; PBjelly v. 2.0 CC Assembly Name :: Rnor_6.0 CC Genome Coverage :: 3x BAC; 6x WGS ABI Sanger reads; 10.0x CC PacBio CC Sequencing Technology :: Sanger; SOLiD; PacBio CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..122095297 FT /organism="Rattus norvegicus" FT /chromosome="9" FT /strain="mixed" FT /mol_type="genomic DNA" FT /sex="pooled males and females" FT /note="pooled female animals of strain BN/SsNHsdMCW plus FT one male of strain SHR (also known as SHR-Akr)" FT /db_xref="taxon:10116" FT assembly_gap 556272..566271 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 568238..578237 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 583341..593340 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 593895..603894 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 608746..618745 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 652291..662290 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 665161..675160 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 678542..688541 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 12002142..12012141 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 23892967..23902966 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 36313342..36323341 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 40948512..40958511 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 41798709..41808708 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 52831462..52841461 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 52844168..52854167 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 72547051..72557050 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 99522546..99532545 FT /estimated_length=10000 FT /gap_type="between scaffolds" FT assembly_gap 114222130..114232129 FT /estimated_length=10000 FT /gap_type="between scaffolds" XX CO join(KL567685.1:1..556271,gap(10000),KL567686.1:1..1966,gap(10000), CO KL567687.1:1..5103,gap(10000),KL567688.1:1..554,gap(10000), CO KL567689.1:1..4851,gap(10000),KL567690.1:1..33545,gap(10000), CO KL567691.1:1..2870,gap(10000),KL567692.1:1..3381,gap(10000), CO KL567693.1:1..11313600,gap(10000),KL567694.1:1..11880825,gap(10000), CO KL567695.1:1..12410375,gap(10000),KL567696.1:1..4625170,gap(10000), CO KL567697.1:1..840197,gap(10000),KL567698.1:1..11022753,gap(10000), CO KL567699.1:1..2706,gap(10000),KL567700.1:1..19692883,gap(10000), CO KL567701.1:1..26965495,gap(10000),KL567702.1:1..14689584,gap(10000), CO KL567703.1:1..7863168) //