ID   CM000003; SV 4; linear; genomic DNA; CON; MAM; 94329250 BP.
XX
AC   CM000003;
XX
PR   Project:PRJNA13179;
XX
DT   16-DEC-2004 (Rel. 82, Created)
DT   19-NOV-2020 (Rel. 144, Last updated, Version 7)
XX
DE   Canis lupus familiaris isolate Tasha breed boxer chromosome 3, whole genome
DE   shotgun sequence.
XX
KW   WGS.
XX
OS   Canis lupus familiaris (dog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis.
XX
RN   [1]
RP   1-94329250
RX   PUBMED; 16341006.
RA   Lindblad-Toh K., Wade C.M., Mikkelsen T.S., Karlsson E.K., Jaffe D.B.,
RA   Kamal M., Clamp M., Chang J.L., Kulbokas E.J. III, Zody M.C., Mauceli E.,
RA   Xie X., Breen M., Wayne R.K., Ostrander E.A., Ponting C.P., Galibert F.,
RA   Smith D.R., DeJong P.J., Kirkness E., Alvarez P., Biagi T., Brockman W.,
RA   Butler J., Chin C.W., Cook A., Cuff J., Daly M.J., DeCaprio D., Gnerre S.,
RA   Grabherr M., Kellis M., Kleber M., Bardeleben C., Goodstadt L., Heger A.,
RA   Hitte C., Kim L., Koepfli K.P., Parker H.G., Pollinger J.P., Searle S.M.,
RA   Sutter N.B., Thomas R., Webber C., Baldwin J., Abebe A., Abouelleil A.,
RA   Aftuck L., Ait-Zahra M., Aldredge T., Allen N., An P., Anderson S.,
RA   Antoine C., Arachchi H., Aslam A., Ayotte L., Bachantsang P., Barry A.,
RA   Bayul T., Benamara M., Berlin A., Bessette D., Blitshteyn B., Bloom T.,
RA   Blye J., Boguslavskiy L., Bonnet C., Boukhgalter B., Brown A., Cahill P.,
RA   Calixte N., Camarata J., Cheshatsang Y., Chu J., Citroen M., Collymore A.,
RA   Cooke P., Dawoe T., Daza R., Decktor K., DeGray S., Dhargay N., Dooley K.,
RA   Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A.,
RA   Egbiremolen O., Elong R., Falk J., Farina A., Faro S., Ferguson D.,
RA   Ferreira P., Fisher S., FitzGerald M., Foley K., Foley C., Franke A.,
RA   Friedrich D., Gage D., Garber M., Gearin G., Giannoukos G., Goode T.,
RA   Goyette A., Graham J., Grandbois E., Gyaltsen K., Hafez N., Hagopian D.,
RA   Hagos B., Hall J., Healy C., Hegarty R., Honan T., Horn A., Houde N.,
RA   Hughes L., Hunnicutt L., Husby M., Jester B., Jones C., Kamat A., Kanga B.,
RA   Kells C., Khazanovich D., Kieu A.C., Kisner P., Kumar M., Lance K.,
RA   Landers T., Lara M., Lee W., Leger J.P., Lennon N., Leuper L., LeVine S.,
RA   Liu J., Liu X., Lokyitsang Y., Lokyitsang T., Lui A., Macdonald J.,
RA   Major J., Marabella R., Maru K., Matthews C., McDonough S., Mehta T.,
RA   Meldrim J., Melnikov A., Meneus L., Mihalev A., Mihova T., Miller K.,
RA   Mittelman R., Mlenga V., Mulrain L., Munson G., Navidi A., Naylor J.,
RA   Nguyen T., Nguyen N., Nguyen C., Nguyen T., Nicol R., Norbu N., Norbu C.,
RA   Novod N., Nyima T., Olandt P., O'Neill B., O'Neill K., Osman S., Oyono L.,
RA   Patti C., Perrin D., Phunkhang P., Pierre F., Priest M., Rachupka A.,
RA   Raghuraman S., Rameau R., Ray V., Raymond C., Rege F., Rise C., Rogers J.,
RA   Rogov P., Sahalie J., Settipalli S., Sharpe T., Shea T., Sheehan M.,
RA   Sherpa N., Shi J., Shih D., Sloan J., Smith C., Sparrow T., Stalker J.,
RA   Stange-Thomann N., Stavropoulos S., Stone C., Stone S., Sykes S.,
RA   Tchuinga P., Tenzing P., Tesfaye S., Thoulutsang D., Thoulutsang Y.,
RA   Topham K., Topping I., Tsamla T., Vassiliev H., Venkataraman V., Vo A.,
RA   Wangchuk T., Wangdi T., Weiand M., Wilkinson J., Wilson A., Yadav S.,
RA   Yang S., Yang X., Young G., Yu Q., Zainoun J., Zembek L., Zimmer A.,
RA   Lander E.S.;
RT   "Genome sequence, comparative analysis and haplotype structure of the
RT   domestic dog";
RL   Nature 438(7069):803-819(2005).
XX
RN   [2]
RP   1-94329250
RA   Jagannathan V., Davis B.W., Liu Y.-H., Kidd J., Hitte C., Lindblad-Toh K.,
RA   Ostrander E.A., Zhang Y.-P., Wang G.-D.;
RT   "Update the genome of boxer (canfam3) by PacBio";
RL   Unpublished.
XX
RN   [3]
RP   1-94329250
RA   Lindblad-toh K., Birren B., Nusbaum C., Abebe A., Abouelleil A.,
RA   Adekoya E., Ait-zahra M., Allen N., Allen T., An P., Anderson M.,
RA   Anderson S., Arachchi H., Armbruster J., Bachantsang P., Baldwin J.,
RA   Barry A., Bayul T., Blitshsteyn B., Bloom T., Blye J., Boguslavskiy L.,
RA   Borowsky M., Boukhgalter B., Brunache A., Butler J., Calixte N., Calvo S.,
RA   Camarata J., Campo K., Chang J., Cheshatsang Y., Citroen M., Collymore A.,
RA   Considine T., Cook A., Cooke P., Corum B., Cuomo C., David R., Dawoe T.,
RA   Degray S., Dodge S., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N.,
RA   Dupes A., Elkins T., Engels R., Erickson J., Farina A., Faro S.,
RA   Ferreira P., Fischer H., Fitzgerald M., Foley K., Gage D., Galagan J.,
RA   Gearin G., Gnerre S., Gnirke A., Goyette A., Graham J., Grandbois E.,
RA   Gyaltsen K., Hafez N., Hagopian D., Hagos B., Hall J., Hatcher B.,
RA   Heller A., Higgins H., Honan T., Horn A., Houde N., Hughes L., Hulme W.,
RA   Husby E., Iliev I., Jaffe D., Jones C., Kamal M., Kamat A., Kamvysselis M.,
RA   Karlsson E., Kells C., Kieu A., Kisner P., Kodira C., Kulbokas E.,
RA   Labutti K., Lama D., Landers T., Leger J., Levine S., Lewis D., Lewis T.,
RA   Liu X., Lokyitsang T., Lokyitsang Y., Lucien O., Lui A., Ma L.J.,
RA   Mabbitt R., Macdonald J., Maclean C., Major J., Manning J., Marabella R.,
RA   Maru K., Matthews C., Mauceli E., Mccarthy M., Mcdonough S., Mcghee T.,
RA   Meldrim J., Meneus L., Mesirov J., Mihalev A., Mihova T., Mikkelsen T.,
RA   Mlenga V., Moru K., Mozes J., Mulrain L., Munson G., Naylor J., Newes C.,
RA   Nguyen C., Nguyen N., Nguyen T., Nicol R., Nielsen C., Nizzari M.,
RA   Norbu C., Norbu N., O'donnell P., Okoawo O., O'leary S., Omotosho B.,
RA   O'neill K., Osman S., Parker S., Perrin D., Phunkhang P., Piqani B.,
RA   Purcell S., Rachupka T., Ramasamy U., Rameau R., Ray V., Raymond C.,
RA   Retta R., Richardson S., Rise C., Rodriguez J., Rogers J., Rogov P.,
RA   Rutman M., Schupbach R., Seaman C., Settipalli S., Sharpe T., Sheridan J.,
RA   Sherpa N., Shi J., Smirnov S., Smith C., Sougnez C., Spencer B.,
RA   Stalker J., Stange-thomann N., Stavropoulos S., Stetson K., Stone C.,
RA   Stone S., Stubbs M., Talamas J., Tchuinga P., Tenzing P., Tesfaye S.,
RA   Theodore J., Thoulutsang Y., Topham K., Towey S., Tsamla T., Tsomo N.,
RA   Vallee D., Vassiliev H., Venkataraman V., Vinson J., Vo A., Wade C.,
RA   Wang S., Wangchuk T., Wangdi T., Whittaker C., Wilkinson J., Wu Y.,
RA   Wyman D., Yadav S., Yang S., Yang X., Yeager S., Yee E., Young G.,
RA   Zainoun J., Zembeck L., Zimmer A., Zody M., Lander E.;
RT   ;
RL   Submitted (08-JUL-2004) to the INSDC.
RL   Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA
RL   02142, USA
XX
RN   [4]
RP   1-94329250
RA   Jagannathan V., Davis B.W., Liu Y.-H., Kidd J., Hitte C., Lindblad-Toh K.,
RA   Ostrander E.A., Zhang Y.-P., Wang G.-D.;
RT   ;
RL   Submitted (03-SEP-2020) to the INSDC.
RL   State Key Laboratory of Genetic Resources and Evolution, Kunming Institute
RL   of Zoology, CAS, 21 Qingsong Rd, CiBa, Kunming, Yunnan 650203, China
XX
DR   MD5; 138b6a90e89ef5f5d82db456cdfc5d1c.
DR   ENA; AAEX04000000; SET.
DR   ENA; AAEX00000000; SET.
DR   BioSample; SAMN02953603.
DR   Ensembl-Scaffolds; 3:1-91889043; canis_familiaris.
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CC   On Jun 1, 2020 this sequence version replaced CM000003.3.
CC   The sequences of chromosomes 27 and 32 (CM000027 and CM000032) were
CC   corrected in October 2020, creating assembly Dog10K_Boxer_Tasha.
CC   
CC   ##Genome-Assembly-Data-START##
CC   Assembly Method        :: Canu v. 1.8
CC   Assembly Name          :: Dog10K_Boxer_Tasha
CC   Genome Representation  :: Full
CC   Expected Final Version :: Yes
CC   Genome Coverage        :: 100.0x
CC   Sequencing Technology  :: PacBio Sequel
CC   ##Genome-Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..94329250
FT                   /organism="Canis lupus familiaris"
FT                   /chromosome="3"
FT                   /sub_species="familiaris"
FT                   /isolate="Tasha"
FT                   /mol_type="genomic DNA"
FT                   /sex="female"
FT                   /note="breed: boxer"
FT                   /db_xref="taxon:9615"
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CO   join(AAEX04000003.1:1..94329250)
//