ID AY769964; SV 1; circular; genomic DNA; STD; PHG; 4530 BP. XX AC AY769964; XX DT 31-AUG-2005 (Rel. 85, Created) DT 23-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Chlamydia phage 4, complete genome. XX KW . XX OS Chlamydia phage 4 OC Viruses; Microviridae; Gokushovirinae; Chlamydiamicrovirus; OC unclassified Chlamydiamicrovirus. XX RN [1] RP 1-4530 RX DOI; 10.1099/vir.0.031583-0. RX PUBMED; 21450942. RA Sait M., Livingstone M., Graham R., Inglis N.F., Wheelhouse N., RA Longbottom D.; RT "Identification, sequencing and molecular analysis of Chp4, a novel RT chlamydiaphage of Chlamydophila abortus belonging to the family RT Microviridae"; RL J. Gen. Virol. 92(Pt 7):1733-1737(2011). XX RN [2] RP 1-4530 RA Graham R.C., Livingstone M.A., Longbottom D.; RT "Identification, genomic sequencing and molecular characterization of a new RT bacteriophage (Chp4) infecting Chlamydophila abortus"; RL Unpublished. XX RN [3] RP 1-4530 RA Graham R.C., Longbottom D.; RT ; RL Submitted (01-OCT-2004) to the INSDC. RL Bacteriology, Moredun Research Institute, Pentlands Science Park, Bush RL Loan, Penicuik, Midlothian, Scotland EH26 0PZ, UK XX DR MD5; 088711b6de135201e44c20704447824b. XX FH Key Location/Qualifiers FH FT source 1..4530 FT /organism="Chlamydia phage 4" FT /host="Chlamydophila abortus" FT /mol_type="genomic DNA" FT /country="United Kingdom" FT /db_xref="taxon:313629" FT gene 1..1665 FT /gene="VP1" FT /locus_tag="Chp4p1" FT /note="ORF1" FT CDS 1..1665 FT /codon_start=1 FT /transl_table=11 FT /gene="VP1" FT /locus_tag="Chp4p1" FT /product="putative major coat protein" FT /db_xref="GOA:Q3ZK01" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR037002" FT /db_xref="UniProtKB/TrEMBL:Q3ZK01" FT /protein_id="AAX12543.1" FT /translation="MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIP FT IFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFCGEQD FT DPGDSTDFLTPILTAPQNGGFAEGSIHDYLGLPTKVAGVQCVAFWHRAYNLIWNQYYRD FT ENIQDSVEVQMGDTTADEVNNYKLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGIVPVQG FT LGIQWGGSTGPNPITASDWRDSVNPTYVNSATQTPTGTNKILSYGQAYYIKKPGEPATD FT PAPRAYVDLGSTSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQR FT AEYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKSFTEHGVILGLAS FT VRADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGPAVKDAQNGNVVVD FT EQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFENLPTLSPEFIEENPPMD FT RVLAVNTEPDFLLDGWFSLRCARPMPVYSVPGLIDHF" FT gene 1373..1471 FT /gene="ORF7" FT /locus_tag="Chp4p2" FT CDS 1373..1471 FT /codon_start=1 FT /transl_table=11 FT /gene="ORF7" FT /locus_tag="Chp4p2" FT /product="hypothetical protein" FT /note="similar to ORF7 of bacteriophage Chp3" FT /db_xref="UniProtKB/TrEMBL:Q3ZK00" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAX12545.1" FT /translation="MSKSLDIRRDLRSIAIRLRKLLASSDQMLQVL" FT gene 1758..1916 FT /gene="ORF6" FT /locus_tag="Chp4p3" FT CDS 1758..1916 FT /codon_start=1 FT /transl_table=11 FT /gene="ORF6" FT /locus_tag="Chp4p3" FT /product="hypothetical protein" FT /note="similar to ORF6 of bacteriophages Chp3, Chp2 and FT phiCPG1" FT /db_xref="UniProtKB/TrEMBL:Q3ZJZ9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAX12547.1" FT /translation="MWRIYESRTTYEHSRFSSFWSCARIILSPWNSFRSFRISWCTKAK FT CHCEANC" FT gene 1771..2331 FT /gene="VP2" FT /locus_tag="Chp4p4" FT /note="ORF2" FT CDS 1771..2331 FT /codon_start=1 FT /transl_table=11 FT /gene="VP2" FT /locus_tag="Chp4p4" FT /product="putative minor spike" FT /note="putative pilot protein" FT /db_xref="UniProtKB/TrEMBL:Q3ZJZ8" FT /protein_id="AAX12544.1" FT /translation="MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAK FT QIAREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPVENAM FT NSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKYMRVAGVPVATEML FT DKTSGLISSSAKAFKNLFSRKGR" FT gene 2332..2778 FT /gene="VP3" FT /locus_tag="Chp4p5" FT /note="ORF3" FT CDS 2332..2778 FT /codon_start=1 FT /transl_table=11 FT /gene="VP3" FT /locus_tag="Chp4p5" FT /product="putative capsid protein" FT /db_xref="InterPro:IPR014131" FT /db_xref="UniProtKB/TrEMBL:Q3ZJZ7" FT /protein_id="AAX12546.1" FT /translation="MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVL FT EHVERRSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKIRERFGNDPEAMLDFLSREE FT NYEEAKALGFVYEDGTSGAPQTFFEADPKDDQNVANQEPGLAQK" FT gene 2990..3109 FT /gene="ORF8" FT /locus_tag="Chp4p6" FT CDS 2990..3109 FT /codon_start=1 FT /transl_table=11 FT /gene="ORF8" FT /locus_tag="Chp4p6" FT /product="putative structural protein" FT /note="similar to the DNA-binding protein J of FT bacteriophage phiX174" FT /db_xref="UniProtKB/TrEMBL:Q3ZJZ6" FT /protein_id="AAX12548.1" FT /translation="MARRYRLSRRRSRRLFSRTALRMHRRNRLRRIMRGGIRF" FT gene 3292..4239 FT /gene="ORF4" FT /locus_tag="Chp4p7" FT CDS 3292..4239 FT /codon_start=1 FT /transl_table=11 FT /gene="ORF4" FT /locus_tag="Chp4p7" FT /product="putative replication protein" FT /db_xref="UniProtKB/TrEMBL:Q3ZJZ5" FT /protein_id="AAX12549.1" FT /translation="MTCISPFVCFIDPCNQLWFPKGEKSSKPWDKVRELNAFEQTQPEE FT YRKRWILMPCRRCKFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDQHLPENGSLVRN FT HPTLFLRRLREHISPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLF FT VSEKLMQLWPYGFSTVGSVTRQSAGYVARYSLKKVSRDISQDHYGQRLPEFLMCSLKPG FT IGADWYEKYKRDVYPQDYLVVQDKGKSFTTRPPRYYDKLHSRFDPEEMDEVKQKRVEKV FT MALPELSQDKAEVKQYIFNDRTKRLFRDYEEESY" FT gene 4269..4523 FT /gene="ORF5" FT /locus_tag="Chp4p8" FT CDS 4269..4523 FT /codon_start=1 FT /transl_table=11 FT /gene="ORF5" FT /locus_tag="Chp4p8" FT /product="putative non-structural protein" FT /db_xref="UniProtKB/TrEMBL:Q3ZJZ4" FT /protein_id="AAX12550.1" FT /translation="MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPTKNQFAA FT HPEDYILYEIGSYDDSTGTFIPLDVPKALGTGLDFKHKQ" XX SQ Sequence 4530 BP; 1300 A; 847 C; 1018 G; 1365 T; 0 other; atggttagga atcggcgttt gccttcagtt atgagtcatt ctttcgcgca agtcccatca 60 gcgcgaattc agagaagttc ttttgataga tcttgtggtt taaaaactac attcgacgcc 120 ggttacctaa tccctatctt ttgtgatgaa gttctccctg gagatacttt ctccttgaaa 180 gaggcgtttt tagcacgtat ggcaacgcct atctttcctc ttatggataa tttgcgttta 240 gatacgcagt atttctttgt tcctcttcga ctattatggt cgaattttca aaagttctgt 300 ggagaacaag atgatcctgg agattctaca gattttctta ccccaatttt gaccgctcct 360 cagaatggtg gttttgctga aggatcgatc catgattatc ttggtctacc tactaaagtt 420 gcaggagttc aatgtgttgc gttttggcac agagcttaca atttgatttg gaaccagtac 480 tatcgtgatg aaaatattca ggattcagtt gaagtgcaaa tgggagatac cactgcagat 540 gaagtgaaca attataagct tcttaagcgc gggaagcgtt atgattattt cacttcatgt 600 ctcccttggc cacaaaaagg tcctgcagtg acaatcggag ttggaggtat tgttcctgtt 660 caaggtttag gaattcaatg gggcggttct acaggtccaa atcctataac tgcttctgat 720 tggagagatt ccgttaatcc tacatatgta aattctgcaa cgcagacgcc tacaggaacg 780 aataagattt tgagttatgg tcaggcgtat tatattaaga agcctggaga accagctaca 840 gatcctgcac ctagggctta tgtagattta ggttcgactt ctcctgtgac gattaattct 900 cttcgtgaag ctttccaatt gcaaaagctt tatgagagag atgcccgtgg tggaacaagg 960 tacattgaga ttattcgttc ccatttcaat gtgcagtctc cagatgcaag gttgcaacgt 1020 gcagagtatc ttggaggttc ttcaactcct gtgaatattt ctccgattcc acagacttcc 1080 tcaacagact ccacatctcc tcaaggaaat cttgctgctt atggtacagc gattggatcg 1140 aagcgagtct tcacaaagtc cttcacagaa catggtgtaa tccttggatt agcctctgta 1200 cgcgccgatc tcaactatca gcaaggtttg gataggatgt ggtcacgaag aacgcgctgg 1260 gacttttact ggcctgctct tagccattta ggtgagcaag ctgtgctcaa taaagagatc 1320 tattgccaag gtcctgcagt taaggatgct cagaatggca atgttgttgt ggatgagcaa 1380 gtctttggat atcaggagag atttgcggag tatcgctata agacttcgaa aattactggc 1440 aagttccgat caaatgctac aagttcttta gattcatggc atttagctca ggaatttgag 1500 aatcttccaa cactttctcc ggagtttatc gaagaaaatc ctcctatgga tcgtgttctt 1560 gctgtaaata ctgagccaga ttttctttta gatggctggt tttcattgcg ttgtgcaaga 1620 ccaatgcctg tctactctgt tccaggcctc attgatcatt tctaatttct actcagtttt 1680 ccgatttgat aaagcaaact cacgttcgta gataagtgag tacggtgaag accaaaacgg 1740 aaagctgagg cgtaaaaatg tggagaattt atgaatcccg aacaacttac gaacactctc 1800 ggttcagcag tttctggagt tgcgcaagga ttatcctttc tccctggaat agcttccgga 1860 gttttaggat atcttggtgc acaaaagcaa aatgccactg cgaagcaaat tgctagagag 1920 caaatggctt ttcaggagcg catgtctaac acggcatacc aacgtgccat ggaagacatg 1980 aagaaagctg gccttaaccc tatgttagct ttttctaaag gcggtgcttc ttctcctgca 2040 ggagcgtcat ggtctccgaa taatcctgta gaaaatgcga tgaattctgg ccttgccgtg 2100 caaagactta cttacgaacg taagaaaatg caggcagagc ttcagaatct tcgtgagcag 2160 aaccgtttga ttagaaatca agcaatacgt gaaggctatc tcgcagaacg agataaatat 2220 atgcgtgttg ctggagttcc tgtggccact gagatgttag ataagacttc tggtcttatc 2280 tcatcttcag ctaaggcatt taagaatctt ttttcaagaa aaggaaggta gatgtttaag 2340 tcggcatatt ccgaaaaaaa atctgtaaag atgaagttca cacagaaatc tttgacgcag 2400 caacacaaca aagatgagtg tgatattaac aacatcgtcg caaaactcaa cgctacaggc 2460 gttttagagc acgtagagcg acgatctcca cgttatatgg actgtatgga ccctatggag 2520 tattccgagg ctctaaacgt cgttattgag gctcaggagc aatttgactc tttaccagcc 2580 aaaattcgtg aacgttttgg aaatgatcca gaagcgatgc tcgatttctt gagccgtgaa 2640 gaaaattatg aagaagcaaa ggcgttaggt tttgtttatg aagatggaac ttctggagca 2700 cctcaaacat tttttgaagc tgatcctaaa gatgatcaaa atgtggcaaa ccaagaacct 2760 ggattagccc aaaaatgagc aaattttgtg caaaaaagtg tgcaaaaaaa tgtgcaaaaa 2820 atgggccaaa aattgccccc aaaatcggag cattttacga gagaaaaaca ccagcgtgta 2880 acagtcttac ttgatctgtt acacgcctgg tggtcggaat tgtaaggaaa ttttttaaaa 2940 ctaagcccta tttagggccc aaaatttaag cttaaaatga ggttaaaaaa tggcacgaag 3000 atacagactt tcgcgacgca gaagtcgacg acttttttca agaactgcat taagaatgca 3060 tcgaagaaat agacttcgaa gaattatgcg tggcggcatt aggttttagt tttggatgtt 3120 aaggaaatct ttaaggttat gctaaattag ctgctatgta taatttggct cgtgacgaat 3180 gtatgtcata ttcgcaccgt ttacaattac acagcagttg aaggcttaga cgttgatttt 3240 taatgtctta gccttcattt ttggtttagt gtgattgcaa atgaggtgct catgacgtgc 3300 atttctcctt ttgtatgttt tatagatcct tgtaaccagc tctggtttcc caaaggtgag 3360 aagtcttcta aaccttggga taaagtccgt gaattaaatg cttttgagca aacgcaacct 3420 gaagagtatc gaaaacgttg gattttgatg ccttgccgta ggtgcaagtt ttgtagagtg 3480 cagaatgcaa agatttggtc gtatcgttgc atgcacgaag cgtctttata ttctcagaat 3540 tgctttttaa ctttgactta tgaggatcag catcttccag agaatggttc tctggtaaga 3600 aatcatccga ctttgtttct taggcgattg agagagcaca tttctcctca taagattcgt 3660 tattttggat gtggtgaata tggatcgaaa ttacaaaggc ctcattatca tcttcttatt 3720 tataattacg attttcctga taaaaagctc ttgagtaaaa agcgtggcaa tcctctcttt 3780 gtttctgaga agttaatgca gctttggccg tatggattct ctacagtggg atctgtaacg 3840 cggcaaagtg caggttatgt agcgcgctat tctttgaaga aagtgagtag agatatttct 3900 caagatcatt atggtcaaag acttccggag tttcttatgt gttctcttaa accaggaata 3960 ggagcggatt ggtatgagaa atataaacgc gatgtctatc ctcaggatta tcttgttgtg 4020 caagataaag ggaagtcttt tacgacgcgt cctccacgtt actatgataa gctacattct 4080 cggtttgatc cggaagagat ggacgaggtc aaacaaaaac gtgtagagaa agtcatggct 4140 ttgcctgagc tatctcagga taaggctgag gtgaagcaat atattttcaa tgaccgtacg 4200 aagagactct ttagagacta tgaggaggag agttactaaa cttttttaaa aaataggagc 4260 ttttttcaat gaaagttttt acagtgtttg atattaagac ggaaatttat cagcagcctt 4320 tttttatgca ggctacggga gcggcaatca gagcgttttc cgatatggta aatgaggatc 4380 ctacaaagaa tcaatttgcc gcgcatcctg aagattacat tctctatgag attggatctt 4440 acgatgactc tactggaact ttcattccct tagatgtgcc taaagcctta ggaacaggct 4500 tggattttaa gcacaaacag tagggaagat 4530 //