ID AE002163; SV 1; circular; genomic DNA; STD; PHG; 4532 BP. XX AC AE002163; XX PR Project:PRJNA247; XX DT 14-MAR-2000 (Rel. 63, Created) DT 11-APR-2022 (Rel. 144, Last updated, Version 13) XX DE Chlamydia phage phiCPAR39, complete genome. XX KW . XX OS Chlamydia phage phiCPAR39 OC Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; OC Petitvirales; Microviridae; Gokushovirinae; Chlamydiamicrovirus. XX RN [1] RP 1-4532 RX DOI; 10.1093/nar/28.6.1397. RX PUBMED; 10684935. RA Read T.D., Brunham R.C., Shen C., Gill S.R., Heidelberg J.F., White O., RA Hickey E.K., Peterson J., Umayam L.A., Utterback T., Berry K., Bass S., RA Linher K., Weidman J., Khouri H., Craven B., Bowman C., Dodson R., RA Gwinn M., Nelson W., DeBoy R., Kolonay J., McClarty G., Salzberg S.L., RA Eisen J., Fraser C.M.; RT "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae RT AR39"; RL Nucleic Acids Res. 28(6):1397-1406(2000). XX RN [2] RP 1-4532 RA Read T.D., Brunham R.C., Shen C., Gill S.R., Heidelberg J.F., White O., RA Hickey E.K., Peterson J., Umayam L.A., Utterback T., Berry K., Bass S., RA Linher K., Weidman J., Khouri H., Craven B., Bowman C., Dodson R., RA Gwinn M., Nelson W., DeBoy R., Kolonay J., McClarty G., Salzberg S.L., RA Eisen J., Fraser C.M.; RT ; RL Submitted (29-FEB-2000) to the INSDC. RL The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD RL 20850, USA XX DR MD5; bcb8538d658853a06d49c213454e448e. DR BioSample; SAMN02641564. XX FH Key Location/Qualifiers FH FT source 1..4532 FT /organism="Chlamydia phage phiCPAR39" FT /host="Chlamydia pneumoniae AR39" FT /mol_type="genomic DNA" FT /db_xref="taxon:2932877" FT gene 155..1816 FT /gene="CPA0001" FT CDS 155..1816 FT /codon_start=1 FT /transl_table=11 FT /gene="CPA0001" FT /product="hypothetical protein" FT /note="hypothetical protein; identified by Glimmer2; FT putative" FT /db_xref="EnsemblGenomes-Gn:AAF39725" FT /db_xref="EnsemblGenomes-Tr:AAF39725" FT /db_xref="GOA:Q9MBM8" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR037002" FT /db_xref="UniProtKB/TrEMBL:Q9MBM8" FT /protein_id="AAF39725.1" FT /translation="MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIP FT IFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLIWSNFQKFCGEQD FT NPGDSTDFLTPVLTAPSGGFTEGSIHDYLGLPTKVAGIECVAFWHRAYNLIWNQYYRDE FT NIQESVDVEMGDTTSNEVNNYKLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGIVPVQGL FT GIQWGNSSAPNPITASSWINSVNPTFINSTTPTPTGTNQILNYGQAYYIKKPGEATTDP FT TPRAYVDLGSTSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRA FT EYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKSFTEHGVILGLASV FT RADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGPAVKDAQNGNVVVDE FT QVFGYQERFAEYRYKTSKITGKFRSNATGSLDAWHLAQQFENLPTLSPEFIEENPPMDR FT VVAVDTEPDFLLDGWFSLRCARPMPVYSVPGLIDHF" FT gene 1922..2482 FT /gene="CPA0002" FT CDS 1922..2482 FT /codon_start=1 FT /transl_table=11 FT /gene="CPA0002" FT /product="capsid protein VP2-related protein" FT /note="similar to SP:P19193 PID:217764 PID:217765 FT PID:217766; identified by sequence similarity; putative" FT /db_xref="EnsemblGenomes-Gn:AAF39722" FT /db_xref="EnsemblGenomes-Tr:AAF39722" FT /db_xref="UniProtKB/TrEMBL:Q9MBM7" FT /protein_id="AAF39722.1" FT /translation="MNPEQLTSTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAK FT QIAREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPVESAM FT NSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKYMRVAGVPVATEML FT DRTSGLLSSSAKAFKNLFSRKGR" FT gene 2483..2929 FT /gene="CPA0004" FT CDS 2483..2929 FT /codon_start=1 FT /transl_table=11 FT /gene="CPA0004" FT /product="capsid protein VP3" FT /note="similar to SP:P19194 PID:217768; identified by FT sequence similarity; putative" FT /db_xref="EnsemblGenomes-Gn:AAF39721" FT /db_xref="EnsemblGenomes-Tr:AAF39721" FT /db_xref="InterPro:IPR014131" FT /db_xref="UniProtKB/TrEMBL:Q9MBM6" FT /protein_id="AAF39721.1" FT /translation="MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVL FT EHVERRSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFLSREE FT NYEEAKALGFVYEDGTSGAPQTFFEADPKDDQNVANQEPGLAQK" FT gene 2937..3044 FT /gene="CPA0005" FT CDS 2937..3044 FT /codon_start=1 FT /transl_table=11 FT /gene="CPA0005" FT /product="hypothetical protein" FT /note="hypothetical protein; identified by Glimmer2; FT putative" FT /db_xref="EnsemblGenomes-Gn:AAF39724" FT /db_xref="EnsemblGenomes-Tr:AAF39724" FT /db_xref="UniProtKB/TrEMBL:Q9MBM5" FT /protein_id="AAF39724.1" FT /translation="MCKKVCKKCPKKGPKNAPKIGAFYERKTPRLKQST" FT gene complement(3122..3217) FT /gene="CPA0006" FT CDS complement(3122..3217) FT /codon_start=1 FT /transl_table=11 FT /gene="CPA0006" FT /product="hypothetical protein" FT /note="hypothetical protein; identified by Glimmer2; FT putative" FT /db_xref="EnsemblGenomes-Gn:AAF39723" FT /db_xref="EnsemblGenomes-Tr:AAF39723" FT /db_xref="GOA:Q9MBM4" FT /db_xref="UniProtKB/TrEMBL:Q9MBM4" FT /protein_id="AAF39723.1" FT /translation="MDASLMQFLKKVFDFYVAEVCIFFVPFLTSF" FT gene 3412..4395 FT /gene="CPA0007" FT CDS 3412..4395 FT /codon_start=1 FT /transl_table=11 FT /gene="CPA0007" FT /product="conserved hypothetical protein" FT /note="conserved hypothetical protein; identified by FT Glimmer2; putative" FT /db_xref="EnsemblGenomes-Gn:AAF39720" FT /db_xref="EnsemblGenomes-Tr:AAF39720" FT /db_xref="UniProtKB/TrEMBL:Q9MBM3" FT /protein_id="AAF39720.1" FT /translation="MVCCNFNLIQAFMACVSPFVCFIDSYNQLWFPKGKKSPKPWDKVR FT ELNSFEQTQPEEYRKRWVVMPCLKCRFCRVRNAKIWSYRCMHEASLYSQNCFLTLTYED FT RYLPENGSLVRNHPRLFLMRLRKEIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDK FT KLLSKKRGNPLFVSEKLMRLWPFGFSTVGSVTRQSAGYVARYSLKKVNGDISQDHYGQR FT LPEFLMCSLKPGIGADWYEKYKRDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEE FT MEEIKQKRVEKFMALPELTQDKAEVKQYIFNDRTKRLFRDYEEESY" XX SQ Sequence 4532 BP; 1311 A; 832 C; 1009 G; 1380 T; 0 other; gatccttcga aaaatcaatt tgccgcgcat cctgaagatt acattctcta tgagattgga 60 tcttacgatg actctactgg aactttcatt cccttagatg tgcctaaagc cttaggaaca 120 ggcttggatt ttaagcacaa acagtaggga agatatggtt aggaatcggc gtttgccttc 180 agttatgagt cattctttcg cgcaagttcc atcagcgcga attcagagaa gttcttttga 240 tagatcttgt ggtttaaaga ctacattcga cgccggttac ctaatcccta tcttttgcga 300 tgaagttctc cctggagata ctttctcctt gaaagaggcg tttttagcac gtatggctac 360 gcctatcttt cctcttatgg ataatttgcg tttagatacg cagtatttct ttgttcctct 420 tcgacttata tggtcgaatt tccaaaagtt ctgtggagaa caagataatc ctggagattc 480 cacagatttt cttaccccag ttttaaccgc tcctagtggg ggatttactg aaggatcaat 540 ccatgattat cttggtctac ctactaaagt tgcaggaatt gaatgtgttg cgttctggca 600 cagagcttac aatttgattt ggaaccagta ctatcgtgat gagaatattc aggaatctgt 660 tgacgtggaa atgggagaca ccacctctaa tgaggtgaat aattataagc ttcttaagcg 720 tgggaagcgt tatgattact tcacttcatg tctcccttgg ccacaaaaag gtcctgcagt 780 gacaatcgga gttggaggta ttgttcctgt tcaaggttta ggaattcaat gggggaattc 840 tagtgctcca aatcctataa ctgcttctag ttggataaat tctgttaatc ctacatttat 900 aaattctaca acgccgacgc ctacaggaac gaatcagatt ttgaattatg gtcaggcgta 960 ttatattaag aagcctggag aagcaactac agatcctaca cctagggctt atgtagattt 1020 aggttctact tctcctgtga cgattaattc tcttcgtgaa gctttccaat tgcaaaagct 1080 ttatgagaga gatgctcgtg gcggaacaag gtacattgag attattcgtt cccatttcaa 1140 tgtgcagtct ccagatgcaa ggttgcaacg tgcagagtat cttggaggtt cttcaactcc 1200 tgtgaatatt tctccgattc cacagacttc ctcaacagac tccacatctc ctcaaggaaa 1260 tcttgctgct tatggtacag cgattggatc gaagcgagtc ttcacaaagt ctttcacaga 1320 acatggtgta attcttggat tagcctctgt acgcgccgat ctcaactatc agcaaggttt 1380 ggataggatg tggtcacgaa gaacgcgctg ggacttttac tggcctgctc ttagccattt 1440 aggtgagcaa gctgtgctca ataaagagat ctattgccaa ggtcctgcag ttaaggatgc 1500 tcagaatggt aatgttgttg tggatgagca agtctttgga tatcaggaga gatttgcgga 1560 gtatcgctat aagacttcga aaatcactgg gaagttccga tcaaatgcta caggttcttt 1620 agatgcatgg catttagctc agcagtttga gaatcttcca acactttctc cagagtttat 1680 cgaagaaaat cctcctatgg atcgtgttgt tgctgtagat actgagccag attttctctt 1740 agatggttgg ttttcattgc gttgtgcaag accaatgcct gtctattctg ttccaggtct 1800 tattgatcat ttctaatttc cactcagttt tccggtttga taaagcaaac tcacgttcgt 1860 agataagtga gtacggtgaa aaccaaaacg gaaagctgag gcgtaaaaat gtggagaatt 1920 tatgaatccc gaacaactca cgagtactct cggttcagca gtttctggag ttgcccaagg 1980 attatccttc ctccctggaa tagcttccgg agttttagga tatcttggcg cacagaaaca 2040 aaatgcgact gcgaagcaaa ttgctagaga gcaaatggct tttcaggagc gcatgtctaa 2100 cacggcatac caacgtgcta tggaagacat gaagaaagct ggccttaacc ctatgttagc 2160 tttttctaaa ggcggtgctt cttctcctgc aggagcgtca tggtctccga ataatcctgt 2220 agagagcgcg atgaattctg gacttgccgt gcaaagactt acttatgaac gtaagaaaat 2280 gcaggcagag cttcagaatc ttcgtgagca gaaccgtttg attagaaacc aagcaatacg 2340 tgaaggctat ctcgcagaac gagataaata tatgcgtgtt gctggagttc ctgtggctac 2400 tgagatgtta gatagaactt caggtcttct ctcatcttca gctaaggcat ttaagaatct 2460 tttttcaaga aaaggaaggt agatgtttaa gtcggcatat tccgaaaaaa aatctgtaaa 2520 gatgaagttt acacagaaat ctttgacgca acaacacaac aaagatgagt gtgatattaa 2580 caacattgtc gcaaaactca acgctacagg cgttttagag cacgtagagc gacgatctcc 2640 acgttatatg gactgtatgg accctatgga gtattccgag gctctaaacg tcgttattga 2700 ggctcaggag caatttgact ctttaccagc gaaagttcgt gaacgttttg gaaatgatcc 2760 ggaagcgatg ctcgatttct tgagccgtga agaaaattat gaagaagcaa aggcgttagg 2820 ttttgtttat gaagatggaa cttctggagc acctcaaaca ttttttgaag ctgatcctaa 2880 agatgatcaa aatgtggcaa accaagaacc tggattagcc caaaaatgag caaattttgt 2940 gcaaaaaagt gtgcaaaaaa tgcccaaaaa aagggccaaa aaatgccccc aaaatcggag 3000 cattttacga gagaaaaaca cctagactta aacagtctac ttgatctgtt taagtctagg 3060 tgataccgat tcaaggaaat atttgaaaaa ataagcccta tttagggccc aaaatttaag 3120 cttaaaatga ggttaaaaat ggcacgaaga agatacagac ttccgcgacg tagaagtcga 3180 agactttttt caagaactgc attaaggatg catccaagaa ataggcttcg aagaattatg 3240 cgtggcggca ttaggttcta gttttggacg ttaaggaaat ctttaaggtt atgctaaatt 3300 aactgtcatg tataatttgg ctcgtgaccg aatagtcata ttcgcactga ataaattgta 3360 cacaacagtt gaaggcttgg atgttgattt ttaatgtctt agccttcatt tttggtttgt 3420 tgtaacttta atttaattca ggcatttatg gcgtgtgtct ctcctttcgt atgttttata 3480 gattcttata accagctctg gtttcccaaa ggtaagaagt ctcctaaacc ttgggataaa 3540 gtccgtgaat taaattcttt tgagcaaact caacctgaag agtatcgaaa acgatgggtt 3600 gtgatgcctt gtcttaagtg taggttttgc agagtgcgga atgcaaagat ttggtcgtat 3660 cgttgcatgc acgaagcgtc tttatattct cagaattgtt ttttaacttt gacttatgag 3720 gatcgttatc ttccagagaa tggctctttg gtgagaaatc atcctcgttt gtttcttatg 3780 cgattgagga aagagatcta tcctcataaa attcgttatt ttggatgtgg tgaatatgga 3840 tcgaaattac aaaggcctca ttatcatctt cttatttata attacgattt tcctgataag 3900 aagctcttga gtaaaaagcg tggcaatcct ctctttgttt ctgagaagtt aatgcggctt 3960 tggccttttg gattctctac agtaggatct gtaacgcggc agagtgcagg ttatgtagcg 4020 cgatattctt tgaagaaagt gaatggagat atttctcaag atcattacgg tcaaagactt 4080 ccggagtttc ttatgtgttc tcttaaacca ggaataggag cggattggta tgagaaatat 4140 aaacgcgatg tttatcctca ggattatctt gttgtgcaag ataaagggaa gtcttttaag 4200 acgcgtcctc cacgttacta tgataagtta cattctcggt ttgatccgga agagatggaa 4260 gagatcaaac aaaaacgcgt agagaaattt atggctttgc ctgagttaac tcaagataag 4320 gctgaggtga agcaatatat tttcaatgac cgtacgaaga gactctttag agactatgag 4380 gaggagagtt actaaacttt tttaaaaaat aggagctttt ttcaatgaaa gtttttacag 4440 tgtttgatat taagacggaa atttatcagc agcctttctt tatgcaggct acgggagcgg 4500 caattagagc gttttccgat atggtaaatg ag 4532 //