ID AB360991; SV 1; linear; genomic DNA; STD; INV; 3081 BP. XX AC AB360991; XX DT 15-SEP-2007 (Rel. 93, Created) DT 10-MAY-2009 (Rel. 100, Last updated, Version 2) XX DE Culicoides jacobsoni mitochondrial cox1, nd2, cox2 genes for cytochrome c DE oxidase subunit I, NADH dehydrogenase subunit 2, cytochrome c oxidase DE subunit II, partial cds, clone: Kag14_2. XX KW . XX OS Culicoides jacobsoni OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; OC Neoptera; Holometabola; Diptera; Nematocera; Chironomoidea; OC Ceratopogonidae; Ceratopogoninae; Culicoides; Avaritia. OG Mitochondrion XX RN [1] RP 1-3081 RA Matsumoto Y.; RT ; RL Submitted (11-SEP-2007) to the INSDC. RL Contact:Yukiko Matsumoto National Institute of Agricultural Sciences, RL Insect-Microbe Research Unit; Owashi1-2, Tsukuba, Ibaraki 305-8634, Japan XX RN [2] RX DOI; 10.1111/j.1365-2915.2008.00789.x. RX PUBMED; 19239613. RA Matsumoto Y., Yanase T., Tsuda T., Noda H.; RT "Species-specific mitochondrial gene rearrangements in biting midges and RT vector species identification"; RL Med. Vet. Entomol. 23(1):47-55(2009). XX DR MD5; d916d7d0f95cd01b2298a26c30335a77. XX FH Key Location/Qualifiers FH FT source 1..3081 FT /organism="Culicoides jacobsoni" FT /organelle="mitochondrion" FT /mol_type="genomic DNA" FT /country="Japan:Kagoshima" FT /collection_date="30-Jul-2004" FT /clone="Kag14_2" FT /db_xref="taxon:469751" FT CDS <1..1297 FT /codon_start=2 FT /transl_table=5 FT /gene="cox1" FT /product="cytochrome c oxidase subunit I" FT /note="putative" FT /db_xref="GOA:A8B0Q4" FT /db_xref="InterPro:IPR000883" FT /db_xref="InterPro:IPR023615" FT /db_xref="InterPro:IPR023616" FT /db_xref="InterPro:IPR033944" FT /db_xref="InterPro:IPR036927" FT /db_xref="UniProtKB/TrEMBL:A8B0Q4" FT /protein_id="BAF80246.1" FT /translation="PLMLGAPDMAFPRMNNMSFWMLPPSLTLLLISSFVENGVGTGWTV FT YPPLSTNISHAGASVDLAIFSLHLAGISSILGAVNFITTIVNMRPNEMIPEFMPLFVWS FT VLITAVLLLLSLPVLAGAITMLLMDRNINTSFFDPSGGGDPILYQHLFWFFGHPEVYIL FT ILPGFGIISHIVLHESGKKIAFGALGMIYAMITIGILGFIVWAHHMFTVGMDVDTRAYF FT TSATMIIAIPTGIKIFSWIATFQGSNLNLSTSLLWTLGFLFLFTMGGLTGVILANSSLD FT IVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWYPLFTGLNLNSMMMKFQFWMMFLGVNL FT TFFPQHFLGLSGMPRRYSDYPDSYISWNIISTLGSTISFFSIFFLMFLIWESMITNRSI FT LYPIYLSSSIEWHQCLPPLEHSYNEMPIMYTK" FT CDS <1410..2426 FT /codon_start=1 FT /transl_table=5 FT /gene="nd2" FT /product="NADH dehydrogenase subunit 2" FT /note="putative; translation start site undetermined" FT /db_xref="GOA:A8B0Q2" FT /db_xref="InterPro:IPR001750" FT /db_xref="InterPro:IPR003917" FT /db_xref="UniProtKB/TrEMBL:A8B0Q2" FT /protein_id="BAF80247.1" FT /translation="INNLFSKTIFFMILMISTLLTISSSSWIGMWMGLELNLLSFIPLL FT IINNNISSTESAIKYFLYQTFASLIFLFFSMIYIMKITFFNYFIFNMEIHYIVMSMNLK FT LVTPMFNMIENLTWFNTLIMLTWQKLAPLVVISYMTMYNYLMLFMMACCLIGAVGGLIQ FT TSMQKLLVYSSMNHLGWLFIAQIYNNYLWLTYFLIYTIITISIISMLKIFNIFNFNQLF FT FFNNNNNFNILMKIFLFMNLLSLGGLPPFLGFFPKLMVIEHMMKSNFYLLMLGLIFCSL FT FTLYYYIRLSFSAFMMNYMSMKWFFYSFNKFYMYIYMIFINFINLFMIWYIVFLNYF" FT CDS 2497..>3081 FT /codon_start=1 FT /transl_table=5 FT /gene="cox2" FT /product="cytochrome c oxidase subunit II" FT /note="putative" FT /db_xref="GOA:A8B0Q6" FT /db_xref="InterPro:IPR002429" FT /db_xref="InterPro:IPR008972" FT /db_xref="InterPro:IPR011759" FT /db_xref="InterPro:IPR036257" FT /db_xref="UniProtKB/TrEMBL:A8B0Q6" FT /protein_id="BAF80248.1" FT /translation="MATWGHLMLLESNSSTMEEMILFHDYTLTLMLGIIMFVAWLLFNM FT IINKLNTKFIMMSHKIEIAWTTIPALILILIAFPSIKLLYLMDEMDNPSVSIKVIGNQW FT FWTYEYSDYENINSFDSYLIPTNKLMNEEFRLLDVDHRLIIPTNTQIRLIITALDVLHS FT WTIPSLGIKLDATPGRLNQMQIHARRSGLYYG" XX SQ Sequence 3081 BP; 1082 A; 348 C; 290 G; 1361 T; 0 other; tcctttaata ttaggagctc ctgatatagc tttccctcga ataaataata taagattttg 60 aatattaccc ccttctttaa ctctattact tattagaagt tttgttgaaa atggagtagg 120 aacaggatga acagtttatc cacctctttc tactaatatt tctcatgcag gagcttctgt 180 tgatttagct attttttcat tacatttagc cggaattagt tctattttag gagctgttaa 240 ttttattact acaattgtaa atatacgtcc taatgaaata attccagaat ttataccatt 300 atttgtttga tctgtattaa ttactgctgt attattatta ttatcattac cagtattagc 360 tggagctatt acaatattat taatagaccg taatattaat acttcatttt ttgatccaag 420 aggaggtgga gatccaattt tatatcaaca tcttttttga ttttttggtc atcctgaagt 480 ttatatttta attttaccag gatttggaat tatttctcat atcgtattac atgaaagagg 540 aaaaaaaatt gcttttggag cattaggaat aatttatgct ataattacta ttggaatttt 600 aggttttatt gtatgagctc atcatatatt tacagttgga atagatgtag atactcgagc 660 atattttaca tcagctacta taattattgc tattcctaca ggaattaaaa tttttagatg 720 aattgctacc tttcaaggta gaaatttaaa tctttctact tctttacttt gaactttagg 780 atttttattt ttatttacaa taggtggact gacaggagta attttagcta attcttctct 840 tgatattgta ttacatgata cttattatgt agttgctcat tttcattatg ttttatcaat 900 aggagcagta ttcgcaatta taggagggtt tattcattga tatcctttat ttacaggatt 960 aaatttaaat tctataatga taaaatttca attttgaata atatttttag gtgtaaattt 1020 aacatttttc cctcaacatt ttttaggttt aagaggaata cctcgtcgat attctgacta 1080 tcctgattct tatatttcat gaaatattat ttcaacatta ggatcaacaa tttctttttt 1140 tagaattttt tttttgatat ttttaatttg agaaagaata attactaatc gttcaattct 1200 ttatcctatt tatttatctt cttctattga atgacaccaa tgtttaccac ctttagaaca 1260 ttcttataat gaaataccaa ttatatatac aaaataattg tttaactaat aatataaata 1320 tatatatata tacatattat aaaattaaaa aaatatatct atatattata aatataaaaa 1380 ttttattaat ttttattaat aataaataaa ttaataattt attttctaaa acaatttttt 1440 ttataatttt aataattaga actttactaa ctatttcttc ttcttcttga attggtatat 1500 gaataggatt agaattaaat cttttatcct ttattccttt attaattatt aataataata 1560 ttagctcaac agaatcagca attaaatatt ttttatacca aacttttgct tctttaattt 1620 ttttattttt ttctataatt tatattataa aaattacatt ttttaattat tttattttta 1680 atatagaaat ccattacatt gtaatatcaa taaatttaaa acttgtaaca ccaatattta 1740 atataattga aaatttaact tgatttaata cattaattat attaacttga caaaaattag 1800 ctcctcttgt tgtcatttct tacataacaa tatataatta tttaatatta tttataatag 1860 cttgttgtct tatcggagca gtaggtggat taattcaaac ttcaatacaa aaattattag 1920 tatattcttc tataaatcat cttggatgat tatttattgc tcaaatttat aataattatt 1980 tatgattaac ttatttttta atttacacta ttattactat ctcaattatt agtatattaa 2040 aaatttttaa tatttttaat tttaatcaat tatttttttt taataataat aataatttca 2100 atattttaat aaaaattttt ttatttataa atttactttc attaggagga cttcctcctt 2160 ttcttggatt tttccctaaa ttaatagtaa ttgaacatat aataaaatca aatttttatt 2220 tattaatatt aggattaatt ttttgctctt tatttacttt atactattat attcgattat 2280 cattttctgc ttttataata aattatatat ctataaaatg atttttttat tcattcaata 2340 aattttatat atatatttat ataattttta ttaactttat taatctattt ataatttgat 2400 atattgtttt tttaaattat ttttaaaaaa aattacaaat ttaatataaa ttaattcaaa 2460 tagagattat aaaatagaat aaattaaatt tcattaatgg caacatgagg acatttaata 2520 ttattagaaa gtaattcttc tacaatagaa gaaataattc tttttcatga ctatacactt 2580 acacttatac taggtattat tatatttgtt gcatgattgt tatttaatat aattattaat 2640 aaattgaata ctaaatttat tataatatct cataaaattg aaattgcttg aactacaatt 2700 cctgccctta ttttaattct tattgctttt ccttctatta aattattata tctaatagat 2760 gaaatagata atccttctgt tagaattaaa gtaattggga atcaatgatt ttgaacatat 2820 gaatattcag actatgaaaa tattaataga tttgattctt atttaattcc tactaataaa 2880 ttaataaatg aagaatttcg tttattagat gtagatcatc gattaattat tcctacaaac 2940 acacaaattc gattaattat tacagcatta gatgttttac attcttgaac tattccctct 3000 ttaggaatca aattagatgc tactccaggt cgattaaatc aaatacaaat ccatgcccga 3060 cgatcaggtt tatattatgg t 3081 //