{"EMPIAR-13896":{"imagesets":[{"segmentations":[],"name":"Focused ion beam-scanning electron microscopy volume of the C. elegans -7 oocyte and surrounding tissue in zarr3 format","directory":"data","category":"micrographs - single frame","header_format":"BIG DATA VIEWER HDF5","data_format":"BIG DATA VIEWER HDF5","num_images_or_tilt_series":5694,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":60.0,"pixel_height":60.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"The volume was acquired at 6 nm isotropic resolution using a customized Zeiss FIB-SEM system.\nLanding energy: 0.9 keV \nBeam current: 2.0 nA\nInLens detector\nWorking distance: 3.1 mm\nScan rate: 0.5 MHz \nFIB milling: 30 kV gallium at 12 nA\n\nThe raw data was registered and aligned using the Render software pipeline (https://github.com/saalfeldlab/render) and exported in the mrc format. The final image data was converted to a multiscale zarr volume for segmentation.","image_width":"12451","image_height":"13941"}],"workflow_file":null,"grant_references":[{"funding_body":"Howard Hughes Medical Institute (HHMI)","code":"Janelia Research Campus","country":"United States"}],"version_history":[],"title":"Focused ion beam-scanning electron microscopy volume of the C. elegans -7 oocyte and surrounding tissue in zarr format","principal_investigator":[{"author_orcid":"0000-0003-2106-3062","middle_name":"J","organization":"Department of Molecular and Cellular Biology, University of California, Davis","street":null,"town_or_city":"Davis","state_or_province":"California","post_or_zip":"95616","telephone":null,"fax":null,"first_name":"Francis","last_name":"McNally","email":"fjmcnally [at] ucdavis.edu","country":"United States","entry":"EMPIAR-13896"}],"status":"REL","deposition_date":"2026-08-31","release_date":"2026-10-20","obsolete_date":null,"update_date":"2026-10-20","corresponding_author":{"author":{"author_orcid":"0000-0003-2106-3062","middle_name":"J","organization":"Department of Molecular and Cellular Biology, University of California, Davis","street":null,"town_or_city":"Davis","state_or_province":"California","post_or_zip":"95616","first_name":"Francis","last_name":"McNally","country":"United States"}},"authors":[{"author":{"name":"Lazureanu DG","author_orcid":"0009-0003-9362-5260"}},{"author":{"name":"Krueger EW","author_orcid":"0000-0003-2528-783X"}},{"author":{"name":"Qiu W","author_orcid":"0009-0008-1764-5928"}},{"author":{"name":"Kopley-Smith AA","author_orcid":"0009-0000-6178-7132"}},{"author":{"name":"Smith CS","author_orcid":null}},{"author":{"name":"Aquino AP","author_orcid":"0009-0006-8042-6678"}},{"author":{"name":"Lele A","author_orcid":"0009-0003-9289-7280"}},{"author":{"name":"Voloshchuk N","author_orcid":null}},{"author":{"name":"Cortes DB","author_orcid":"0000-0001-9538-0621"}},{"author":{"name":"Park M","author_orcid":"0000-0002-6378-1145"}},{"author":{"name":"Uryo H","author_orcid":"0000-0003-2345-4104"}},{"author":{"name":"Silva M","author_orcid":"0000-0002-8698-6477"}},{"author":{"name":"Trautman E","author_orcid":"0000-0001-8588-0569"}},{"author":{"name":"Innerberger M","author_orcid":"0000-0002-7001-8682"}},{"author":{"name":"Preibisch S","author_orcid":"0000-0002-0276-494X"}},{"author":{"name":"Vaxenburg R","author_orcid":"0009-0007-0262-7877"}},{"author":{"name":"Stark A","author_orcid":"0009-0009-1222-6692"}},{"author":{"name":"Bleck CKE","author_orcid":"0000-0003-1029-3444"}},{"author":{"name":"Reilly M","author_orcid":"0000-0002-7180-7763"}},{"author":{"name":"Wang MC","author_orcid":"0000-0002-5898-6007"}},{"author":{"name":"Shroff H","author_orcid":"0000-0003-3613-8215"}},{"author":{"name":"McNally FJ","author_orcid":"0000-0003-2106-3062"}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Lazureanu DG","author_orcid":"0009-0003-9362-5260"},{"name":"Krueger EW","author_orcid":"0000-0003-2528-783X"},{"name":"Qiu W","author_orcid":"0009-0008-1764-5928"},{"name":"Kopley-Smith AA","author_orcid":"0009-0000-6178-7132"},{"name":"Smith CS","author_orcid":null},{"name":"Aquino AP","author_orcid":"0009-0006-8042-6678"},{"name":"Lele A","author_orcid":"0009-0003-9289-7280"},{"name":"Voloshchuk N","author_orcid":null},{"name":"Cortes DB","author_orcid":"0000-0001-9538-0621"},{"name":"Park M","author_orcid":"0000-0002-6378-1145"},{"name":"Uryo H","author_orcid":"0000-0003-2345-4104"},{"name":"Silva M","author_orcid":"0000-0002-8698-6477"},{"name":"Trautman E","author_orcid":"0000-0001-8588-0569"},{"name":"Innerberger M","author_orcid":"0000-0002-7001-8682"},{"name":"Preibisch S","author_orcid":"0000-0002-0276-494X"},{"name":"Vaxenburg R","author_orcid":"0009-0007-0262-7877"},{"name":"Stark A","author_orcid":"0009-0009-1222-6692"},{"name":"Bleck CKE","author_orcid":"0000-0003-1029-3444"},{"name":"Reilly M","author_orcid":"0000-0002-7180-7763"},{"name":"Wang MC","author_orcid":"0000-0002-5898-6007"},{"name":"Shroff H","author_orcid":"0000-0003-3613-8215"},{"name":"McNally FJ","author_orcid":"0000-0003-2106-3062"}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Organelle Volume Facilitates Spindle Positioning During C. elegans Female Meiosis","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":"10.64898/2026.10.07.757430","pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"1017.6 GB","experiment_type":"FIB-SEM","scale":"tissue","entry_doi":"10.6019/EMPIAR-13896"}}