{"EMPIAR-13880":{"imagesets":[{"segmentations":[],"name":"Cryo-electron tomography data collected in the nucleolus of HeLa cells on cryo-FIB lamellae: frames","directory":"data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":12825,"frames_per_image":10,"frame_range_min":0,"frame_range_max":9,"voxel_type":"UNSIGNED BYTE","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"data/*/frames*/*.tif","picked_particles_file_pattern":"data/extracted_particles/*.star","picked_particles_directory":"data/extracted_particles","details":"frames: the raw frames before processing.\nmdocs: original modc files for tilt series.\ncsv: bad tilts needs to be removed listed in csv files.\ngain: gain reference.\ndefectmap: defect file for Gatan K3 camera.\nwarp_frameseries_xml: xml files with motion correction and CTF estimation information for the frames, can be used to generate tomostar files.\nwarp_tiltseries_xml: xml files with alignment and CTF estimation information for the tilts, can be used to reconstruct tomograms.\ntlt_xf: rawtlt files and .xf files for tilt series alignment.\nextracted_particels: original particle list extracted from template matching before 3D classification.\nparticles_M_Refine: particle list for the reconstruction of the final EM maps.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Cryo-electron tomography data collected in the nucleolus of HeLa cells on cryo-FIB lamellae: reconstructions","directory":"data","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":398,"frames_per_image":450,"frame_range_min":1,"frame_range_max":450,"voxel_type":"32 BIT FLOAT","pixel_width":13.7,"pixel_height":13.7,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Path: /data/[date]/reconstruction. Recosntructed tomograms in WarpTools using the alignments in xml files listed in the same entry.","image_width":"1024","image_height":"1440"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cryo-electron tomography data collected in the nucleolus of HeLa cells on cryo-FIB lamellae","principal_investigator":[{"author_orcid":"0000-0003-2176-8337","middle_name":"W","organization":"EMBL","street":"Meyerhofstraße 1","town_or_city":"Heidelberg","state_or_province":"Baden-Württemberg","post_or_zip":"69117","telephone":null,"fax":null,"first_name":"Christoph","last_name":"Müller","email":"christoph.mueller [at] embl.de","country":"Germany","entry":"EMPIAR-13880"}],"status":"REL","deposition_date":"2026-07-23","release_date":"2026-10-22","obsolete_date":null,"update_date":"2026-10-22","corresponding_author":{"author":{"author_orcid":"0000-0003-3655-3507","middle_name":null,"organization":"EMBL","street":"Meyerhofstraße 1","town_or_city":"Heidelberg","state_or_province":"Baden-Württemberg","post_or_zip":"69117","first_name":"Xiaohan","last_name":"Zhao","country":"Germany"}},"authors":[{"author":{"name":"Zhao X","author_orcid":"0000-0003-3655-3507"}},{"author":{"name":"Mahamid J","author_orcid":"0000-0001-6968-041X"}},{"author":{"name":"Müller CW","author_orcid":"0000-0003-2176-8337"}}],"cross_references":["EMD-59083","EMD-59069","EMD-59085","EMD-59077","EMD-59086","EMD-58993","EMD-59076","EMD-59082","EMD-59088","EMD-59070"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Zhao X","author_orcid":"0000-0003-3655-3507"},{"name":"Hayashi Y","author_orcid":"0000-0003-2530-7714"},{"name":"Fung HKH","author_orcid":"0000-0001-9568-1782"},{"name":"Cuylen-Häring S","author_orcid":"0000-0002-1193-4648"},{"name":"Mahamid J","author_orcid":"0000-0001-6968-041X"},{"name":"Müller CW","author_orcid":"0000-0003-2176-8337"}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"In-cell structures visualize human pre-ribosome assembly in the nucleolus","volume":null,"country":"Germany","first_page":null,"last_page":null,"year":null,"language":"English","doi":null,"pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Science","journal_abbreviation":"Science","issue":null,"preprint":false}],"dataset_size":"1.8 TB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-13880"}}