{"EMPIAR-13662":{"imagesets":[{"segmentations":[],"name":"HN-AMPPNP complex","directory":"data/HerA-NurA-AMPPNP_complex","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":4750,"frames_per_image":50,"frame_range_min":1,"frame_range_max":50,"voxel_type":"UNSIGNED BYTE","pixel_width":0.794,"pixel_height":0.794,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- EMD-66462\n\n- Microscope: CRYOARMTM 300\n- Detector: Gatan K3 camera\n- Acceleration voltage (kV): 300\n- Spherical aberration (Cs) : 2.7\n- Nominal Defocus (μm): -1.4 to - 1.6\n- Average electron dose per image (e-/A2): 50\n\n- Please use 'CountCDSRef_2021-10-05_19.22.11_194001_3_112-1_0000.mrc' as a gain reference with y-flipping and no rotation.","image_width":"4092","image_height":"5760"},{"segmentations":[],"name":"HN-AMPPNP-dsDNA complex","directory":"data/HerA-NurA-AMPPNP-dsDNA_complex","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":5600,"frames_per_image":50,"frame_range_min":1,"frame_range_max":50,"voxel_type":"UNSIGNED BYTE","pixel_width":0.752,"pixel_height":0.752,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- EMD-66463 \n\n- Microscope: CRYOARMTM 300\n- Detector: Gatan K3 camera\n- Acceleration voltage (kV): 300\n- Spherical aberration (Cs) : 2.7\n- Nominal Defocus (μm): -1.4 to - 1.6\n- Average electron dose per image (e-/A2): 50\n\n- Please use \"CountCDSRef_2022-04-26_21.20.01_20220426N11_195-1_0000.mrc\" as a gain reference with y-flipping and no rotation.","image_width":"4092","image_height":"5750"},{"segmentations":[],"name":"HN-ATPγS-dsDNA complex","directory":"data/HerA-NurA-ATPgS-dsDNA_complex","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":10350,"frames_per_image":60,"frame_range_min":1,"frame_range_max":60,"voxel_type":"UNSIGNED BYTE","pixel_width":0.752,"pixel_height":0.752,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- EMD-66464 (State 1)\n- EMD-66465 (State 2)\n- EMD-66466 (State 3)\n\n- Microscope: CRYOARMTM 300\n- Detector: Gatan K3 camera\n- Acceleration voltage (kV): 300\n- Spherical aberration (Cs) : 2.7\n- Nominal Defocus (μm): -1.4 to - 1.6\n- Average electron dose per image (e-/A2): 50\n\n- Please use \"CountCDSRef_2024-02-09_13.36.57_2089_20240206N04_120-1_0000.mrc\"","image_width":"4092","image_height":"5760"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"The cryo-EM structure of HerA-NurA complex from Thermococcus kodakarensis","principal_investigator":[{"author_orcid":"0000-0002-4244-8829","middle_name":null,"organization":"Department of Bioscience and Biotechnology, Kyushu University","street":"744 Motooka, Nishi-ku","town_or_city":"Fukuoka","state_or_province":null,"post_or_zip":"819-0395","telephone":null,"fax":null,"first_name":"Tomoyuki","last_name":"Numata","email":"tomoyuki.numata94 [at] agr.kyushu-u.ac.jp","country":"Japan","entry":"EMPIAR-13662"}],"status":"REL","deposition_date":"2026-03-23","release_date":"2026-10-06","obsolete_date":null,"update_date":"2026-10-06","corresponding_author":{"author":{"author_orcid":"0000-0002-4244-8829","middle_name":null,"organization":"Department of Bioscience and Biotechnology, Kyushu University","street":"744 Motooka, Nishi-ku","town_or_city":"Fukuoka","state_or_province":null,"post_or_zip":"812-8582","first_name":"Tomoyuki","last_name":"Numata","country":"Japan"}},"authors":[{"author":{"name":"Uda K","author_orcid":"0009-0001-0719-3381"}},{"author":{"name":"Numata T","author_orcid":"0000-0002-4244-8829"}}],"cross_references":["EMD-66465","EMD-66466","EMD-66464","EMD-66462","EMD-66463"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Uda K","author_orcid":"0009-0001-0719-3381"},{"name":"Yamagami T","author_orcid":"0000-0003-0269-8062"},{"name":"Ishino S","author_orcid":"0000-0002-1833-1735"},{"name":"Gerle C","author_orcid":"0000-0002-7265-2804"},{"name":"Gopalasingam CC","author_orcid":"0000-0002-9014-9380"},{"name":"Shigematsu H","author_orcid":"0000-0003-3951-8651"},{"name":"Numata T","author_orcid":"0000-0002-4244-8829"},{"name":"Ishino Y","author_orcid":"0000-0001-9419-0826"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Substrate specificity and action mechanism of the HerA-NurA nuclease from the hyperthermophilic archaeon <i>Thermococcus kodakarensis</i>","volume":"17","country":"","first_page":null,"last_page":null,"year":"2026","language":"English","doi":"10.1128/mbio.03523-25","pubmedid":"41641993","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"mBio","journal_abbreviation":"mBio","issue":"3","preprint":false}],"dataset_size":"4.7 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["9x1o","9x1p","9x1n","9x1l","9x1m"],"entry_doi":"10.6019/EMPIAR-13662"}}