{"EMPIAR-13426":{"imagesets":[{"segmentations":[],"name":"Structure of arginine oxidase from Pseudomonas sp. TRU 7192","directory":"data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":5035,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":0.96,"pixel_height":0.96,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Microscope: JEOL JEM-Z320FHC\n- Acceleration voltage (kV): 300\n- Spherical aberration (mm) : 3.4\n- Detector: Gatan K2 Summit\n- Please ignore the pixel size in the header; use 0.96 A/px.\n- Dose per frame (e-/A^2): 1.74\n- Number of frames per image: 40\n- Gain reference (MRC format) is included in the folder with the movie files. The gain was created from the dataset by using the 'relion_estimate_gain' command and can be used in RELION without flipping/rotation. In CryoSPARC, select \"flip gain ref in Y\".\n- Please ignore the pixel size in the header; use 0.96 A/px.","image_width":"3710","image_height":"3838"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cryo-EM SPA dataset of arginine oxidase from Pseudomonas sp. TRU 7192","principal_investigator":[{"author_orcid":"0000-0003-1274-1589","middle_name":null,"organization":"Research Institute for Bioscience Products & Fine Chemicals, Ajinomoto Co. Inc.","street":"1-1 Suzuki-cho, Kawasaki-ku","town_or_city":"Kawasaki-ku","state_or_province":null,"post_or_zip":"565-0871","telephone":null,"fax":null,"first_name":"Masayuki","last_name":"Sugiki","email":"masayuki.sugiki.j56 [at] asv.ajinomoto.com","country":"Japan","entry":"EMPIAR-13426"}],"status":"REL","deposition_date":"2024-12-05","release_date":"2026-06-17","obsolete_date":null,"update_date":"2026-06-17","corresponding_author":{"author":{"author_orcid":"0000-0003-1274-1589","middle_name":null,"organization":"Research Institute for Bioscience Products & Fine Chemicals, Ajinomoto Co. Inc.","street":"1-1 Suzuki-cho, Kawasaki-ku","town_or_city":"Kawasaki","state_or_province":"Kanagawa","post_or_zip":"210-8681","first_name":"Hiroki","last_name":"Yamaguchi","country":"Japan"}},"authors":[{"author":{"name":"Yamaguchi H","author_orcid":"0000-0003-1274-1589"}},{"author":{"name":"Takahashi K","author_orcid":"0000-0003-3275-4109"}},{"author":{"name":"Numoto N","author_orcid":"0000-0001-6113-9792"}},{"author":{"name":"Suzuki H","author_orcid":null}},{"author":{"name":"Tatsumi M","author_orcid":null}},{"author":{"name":"Kamegawa A","author_orcid":null}},{"author":{"name":"Nishikawa K","author_orcid":null}},{"author":{"name":"Asano Y","author_orcid":null}},{"author":{"name":"Mizukoshi T","author_orcid":null}},{"author":{"name":"Miyano H","author_orcid":null}},{"author":{"name":"Fujiyoshi Y","author_orcid":null}},{"author":{"name":"Sugiki M","author_orcid":null}}],"cross_references":["EMD-36635"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Yamaguchi H","author_orcid":"0000-0003-1274-1589"},{"name":"Takahashi K","author_orcid":"0000-0003-3275-4109"},{"name":"Numoto N","author_orcid":"0000-0001-6113-9792"},{"name":"Suzuki H","author_orcid":null},{"name":"Tatsumi M","author_orcid":null},{"name":"Kamegawa A","author_orcid":null},{"name":"Nishikawa K","author_orcid":null},{"name":"Asano Y","author_orcid":null},{"name":"Mizukoshi T","author_orcid":null},{"name":"Miyano H","author_orcid":null},{"name":"Fujiyoshi Y","author_orcid":null},{"name":"Sugiki M","author_orcid":null}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography","volume":null,"country":"","first_page":null,"last_page":null,"year":"2025","language":"English","doi":"10.1093/jb/mvae070","pubmedid":"39420599","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Journal of biochemistry","journal_abbreviation":"J Biochem","issue":null,"preprint":false}],"dataset_size":"916.4 GB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["8jt7"],"entry_doi":"10.6019/EMPIAR-13426"}}