{"EMPIAR-13318":{"imagesets":[{"segmentations":[],"name":"Phage LUZ19 SPA dataset 1","directory":"data/SPA_LUZ19_191207","category":"micrographs - multiframe","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":14878,"frames_per_image":41,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.07,"pixel_height":1.07,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"data/SPA_LUZ19_particles_coords","details":"Motion corrected micrographs of phage LUZ19. This dataset was merged with the SPA dataset 2 stored in the folder: data/SPA_LUZ19_200205 and used for single particle analysis of phage LUZ19 native particle. Particle and sub-particle positions are stored as a star files in the listed directory.","image_width":"4096","image_height":"4096"},{"segmentations":[],"name":"Phage LUZ19 SPA dataset 2","directory":"data/SPA_LUZ19_200205","category":"micrographs - multiframe","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":10702,"frames_per_image":41,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.063,"pixel_height":1.063,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"data/SPA_LUZ19_particles_coords","details":"Motion corrected micrographs of phage LUZ19. This dataset was merged with the SPA dataset 1 stored in the folder data/SPA_LUZ19_191207 and used for single-particle analysis of the native phage LUZ19 particle. The apix of this dataset was curated to 1.07A. Particle and sub-particle positions are stored as a star files in the listed directory.","image_width":"4096","image_height":"4096"},{"segmentations":[],"name":"Phage LUZ19 infection on PAO1 tomography dataset","directory":"data/tomo_LUZ19_PAO1_tif","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":3731,"frames_per_image":4,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":1.65,"pixel_height":1.65,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unprocessed micrographs of tilt series capturing the phage LUZ19 early infection of PAO1 cells. The mdocs corresponding to tomograms collected from this dataset are located in the folder: data/tomo_LUZ19_PAO1_tomo_mdoc. The Gain acquired during the data collection in the folder: data/tomo_LUZ19_PAO1_gain. Due to a badly collected gain, it was trimmed. The movie of the reconstructed and segmented tomogram number 84 from this dataset is in the folder: data/LUZ19_T4P_mov.","image_width":"4096","image_height":"5760"},{"segmentations":[],"name":"Phage LUZ19 ejectosome tomography","directory":"data/tomo_LUZ19_ejectosome_eers","category":"micrographs - multiframe","header_format":"EER","data_format":"EER","num_images_or_tilt_series":3186,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":1.55,"pixel_height":1.55,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unprocessed micrographs of tilt series capturing the phage LUZ19 early infection of PAO1 cells. The mdocs corresponding to tomograms collected from this dataset are located in the folder: data/tomo_LUZ19_ejectosome_mdoc.","image_width":"4096","image_height":"4096"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cryo-EM of Pseudomonas phage LUZ19","principal_investigator":[{"author_orcid":null,"middle_name":null,"organization":"CEITEC Masaryk university","street":null,"town_or_city":"Brno","state_or_province":null,"post_or_zip":"62500","telephone":null,"fax":null,"first_name":"Pavel","last_name":"Plevka","email":"pavel.plevka [at] ceitec.muni.cz","country":"Czech Republic","entry":"EMPIAR-13318"}],"status":"REL","deposition_date":"2026-02-11","release_date":"2026-11-09","obsolete_date":null,"update_date":"2026-11-09","corresponding_author":{"author":{"author_orcid":"0009-0008-1741-6041","middle_name":null,"organization":"CEITEC Masaryk university","street":null,"town_or_city":"Brno","state_or_province":null,"post_or_zip":"62500","first_name":"Anna","last_name":"Štefánik Sobotková","country":"Czech Republic"}},"authors":[{"author":{"name":"Štefánik Sobotková A","author_orcid":null}},{"author":{"name":"Cieniková Z","author_orcid":null}},{"author":{"name":"Mironova Y","author_orcid":null}},{"author":{"name":"Hlavenková Z","author_orcid":null}},{"author":{"name":"Plevka P","author_orcid":null}}],"cross_references":["EMD-54828","EMD-56773","EMD-54818","EMD-54599","EMD-54427","EMD-54676","EMD-55352"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Štefánik Sobotková A","author_orcid":"0009-0008-1741-6041"},{"name":"Cieniková Z","author_orcid":null},{"name":"Mironova Y","author_orcid":null},{"name":"Plevka P","author_orcid":null},{"name":"Hlavenková Z","author_orcid":null}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Structure and host attachment of Pseudomonas phage LUZ19","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":null,"pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"","journal_abbreviation":"","issue":null,"preprint":false}],"dataset_size":"1.8 TB","experiment_type":"EMDB","scale":"virus","related_pdb_entries":["9sfn","28sd","9sfd","9s5j","9s0y","9s9b","9sys"],"entry_doi":"10.6019/EMPIAR-13318"}}