{"EMPIAR-13295":{"imagesets":[{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 1","directory":"data/movies_210623_Jun22","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2001,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun22/mic_Jun22_*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 2","directory":"data/movies_210623_Jun23-0","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2104,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun23-0/mic_Jun23_0*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 3","directory":"data/movies_210623_Jun23-1","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2044,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun23-1/mic_Jun23_1*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 4","directory":"data/movies_210623_Jun23-2","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":794,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun23-2/mic_Jun23_2*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 5","directory":"data/movies_210623_Jun24-0","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2109,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun24-0/mic_Jun24_0*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 6","directory":"data/movies_210623_Jun24-1","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2153,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun24-1/mic_Jun24_1*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 7","directory":"data/movies_210623_Jun24-2","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":792,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun24-2/mic_Jun24_2*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 8","directory":"data/movies_210623_Jun25-0","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2115,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun25-0/mic_Jun25_0*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of phage 812 after genome ejection, batch 9","directory":"data/movies_210623_Jun25-1","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1259,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.057,"pixel_height":1.057,"micrographs_file_pattern":"data/movies_210623_Jun25-1/mic_Jun25_1*.tif","picked_particles_file_pattern":"data/*_particle_data.star","picked_particles_directory":"","details":"Each multi-frame micrograph has a corresponding metadata file [name].mdoc. Particle positions and orientations (provided as Relion .star files for each associated EMDB entry) were determined on images after alignment and dose-weighting of the multi-frame micrographs. Gain reference file CountRef_mic_Jun22_14.27.36.dm4 and detector defect file k2Defects.txt are provided in data/.","image_width":"3838","image_height":"3710"}],"workflow_file":null,"grant_references":[{"funding_body":"Ministry of Education, Youth and Sports of the Czech Republic","code":"LM2023042","country":"Czech Republic"},{"funding_body":"Ministry of Education, Youth and Sports of the Czech Republic","code":"90254","country":"Czech Republic"},{"funding_body":"European Regional Development Fund","code":"CZ.02.01.01/00/23_015/0008175","country":"European Union"},{"funding_body":"European Research Council (ERC)","code":"101043452","country":"European Union"},{"funding_body":"National Institute of Virology and Bacteriology","code":"LX22NPO5103","country":"Czech Republic"}],"version_history":[],"title":"Cryo-EM of Staphylococcus phage 812 particles after genome release treatment","principal_investigator":[{"author_orcid":"0000-0003-4215-3315","middle_name":null,"organization":"CEITEC Masaryk university","street":"Kamenice 753/5","town_or_city":"Brno","state_or_province":null,"post_or_zip":"625 00","telephone":null,"fax":null,"first_name":"Pavel","last_name":"Plevka","email":"pavel.plevka [at] ceitec.muni.cz","country":"Czech Republic","entry":"EMPIAR-13295"}],"status":"REL","deposition_date":"2026-02-10","release_date":"2026-03-04","obsolete_date":null,"update_date":"2026-03-04","corresponding_author":{"author":{"author_orcid":"0000-0003-4215-3315","middle_name":null,"organization":"Central European Institute of Technology, Masaryk university","street":"Kamenice 753/5","town_or_city":"Brno","state_or_province":null,"post_or_zip":"625 00","first_name":"Pavel","last_name":"Plevka","country":"Czech Republic"}},"authors":[{"author":{"name":"Cieniková Z","author_orcid":"0009-0000-8696-2566"}},{"author":{"name":"Šiborová M","author_orcid":"0000-0002-6879-5247"}},{"author":{"name":"Plevka P","author_orcid":"0000-0003-4215-3315"}}],"cross_references":["EMD-18395","EMD-18369","EMD-18372","EMD-18385","EMD-18213","EMD-18065","EMD-18048"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Cieniková Z","author_orcid":"0009-0000-8696-2566"},{"name":"Nováček J","author_orcid":"0000-0003-4013-3898"},{"name":"Šiborová M","author_orcid":"0000-0002-6879-5247"},{"name":"Popelářová B","author_orcid":"0000-0003-3760-0539"},{"name":"Füzik T","author_orcid":"0000-0002-1190-0210"},{"name":"Botka T","author_orcid":"0000-0003-2708-3718"},{"name":"Benešík M","author_orcid":"0000-0001-6966-3345"},{"name":"Bárdy P","author_orcid":"0000-0002-1223-2584"},{"name":"Pantůček R","author_orcid":"0000-0002-3950-675X"},{"name":"Plevka P","author_orcid":"0000-0003-4215-3315"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Genome anchoring, retention, and release by neck proteins of Staphylococcus phage 812","volume":"9","country":"","first_page":null,"last_page":null,"year":"2026","language":"English","doi":"10.1038/s42003-025-09477-8","pubmedid":"41507424","details":"Purified particles of Staphylococcus phage 812 after tail contraction and genome ejection treatment.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Communications biology","journal_abbreviation":"Commun Biol","issue":"1","preprint":false}],"dataset_size":"1.7 TB","experiment_type":"EMDB","scale":"virus","related_pdb_entries":["8qek","8qem","8q7d","8q1i","8q01"],"entry_doi":"10.6019/EMPIAR-13295"}}