{"EMPIAR-13055":{"imagesets":[{"segmentations":[],"name":"IsoNet tomograms","directory":"data/bin4_isonet","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":72,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":14.08,"pixel_height":14.08,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms were denoised using IsoNet after running cryo-CARE. One model per tomogram was trained.","image_width":"928","image_height":"928"},{"segmentations":[],"name":"cryo-CARE tomograms","directory":"data/bin4_cryocare","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":72,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":14.08,"pixel_height":14.08,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms were denoised using cryo-CARE. One model per tomogram was trained.","image_width":"928","image_height":"928"},{"segmentations":[],"name":"CTF-corrected tomograms (phase-flipped)","directory":"data/bin4_phaseflip","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":72,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":14.08,"pixel_height":14.08,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms reconstructed with CTF correction by phase-flipping in IMOD.","image_width":"928","image_height":"928"},{"segmentations":[],"name":"Raw tomograms","directory":"data/bin4_raw","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":73,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":14.08,"pixel_height":14.08,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Raw tomograms reconstructed by filtered backprojection in IMOD.","image_width":"928","image_height":"928"},{"segmentations":[],"name":"Tilt series","directory":"data/tilt-series","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":72,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.52,"pixel_height":3.52,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series processed with Etomo in IMOD. Bad tilts were manually excluded. Corresponding .xf and .tlt files are available for the tomogram reconstruction, as well as the original TS before dose-filtering and the stacks generated from ODD/EVEN raw frames from cryo-CARE denoising.","image_width":"3712","image_height":"3712"}],"workflow_file":null,"grant_references":[{"funding_body":"National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)","code":"R35GM130286","country":"United States"}],"version_history":[],"title":"Cryo-electron tomography of the MTEC transition zone","principal_investigator":[{"author_orcid":"0000-0002-0941-4387","middle_name":null,"organization":"Biozentrum, University of Basel","street":"Spitalstrasse 41","town_or_city":"Basel","state_or_province":null,"post_or_zip":"4056","telephone":"+41 61 207 65 55","fax":"+41 61 207 65 55","first_name":"Benjamin","last_name":"Engel","email":"ben.engel [at] unibas.ch","country":"Switzerland","entry":"EMPIAR-13055"}],"status":"REL","deposition_date":"2025-10-15","release_date":"2025-11-13","obsolete_date":null,"update_date":"2026-01-20","corresponding_author":{"author":{"author_orcid":"0000-0003-4247-4303","middle_name":null,"organization":"Biozentrum, University of Basel","street":"Spitalstrasse 41","town_or_city":"Basel","state_or_province":null,"post_or_zip":"4056","first_name":"Ricardo","last_name":"Diogo Righetto","country":"Switzerland"}},"authors":[{"author":{"name":"McCafferty CL","author_orcid":"0000-0002-0872-4527"}},{"author":{"name":"van den Hoek H","author_orcid":"0000-0003-4978-8516"}},{"author":{"name":"Müller A","author_orcid":null}},{"author":{"name":"Van der Stappen P","author_orcid":null}},{"author":{"name":"Righetto RD","author_orcid":"0000-0003-4247-4303"}},{"author":{"name":"Stearns T","author_orcid":null}},{"author":{"name":"Engel BD","author_orcid":"0000-0002-0941-4387"}}],"cross_references":["EMD-55386"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Bertiaux E","author_orcid":null},{"name":"Louvel V","author_orcid":null},{"name":"McCafferty CL","author_orcid":null},{"name":"van den Hoek H","author_orcid":null},{"name":"Batman U","author_orcid":null},{"name":"Mukherjee S","author_orcid":null},{"name":"Bournonville L","author_orcid":null},{"name":"Mercey O","author_orcid":null},{"name":"Méan I","author_orcid":null},{"name":"Righetto RD","author_orcid":null},{"name":"Müller A","author_orcid":null},{"name":"Van der Stappen P","author_orcid":null},{"name":"Buss G","author_orcid":null},{"name":"Daraspe J","author_orcid":null},{"name":"Genoud C","author_orcid":null},{"name":"Stearns T","author_orcid":null},{"name":"Engel BD","author_orcid":null},{"name":"Hamel V","author_orcid":"0000-0001-5092-2343"},{"name":"Guichard P","author_orcid":"0000-0002-0363-1049"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"The luminal ring protein C2CD3 acts as a radial in-to-out organizer of the distal centriole and appendages","volume":"23","country":"","first_page":null,"last_page":null,"year":"2025","language":"English","doi":"10.1371/journal.pbio.3003519","pubmedid":"41364719","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"PLoS biology","journal_abbreviation":"PLoS Biol","issue":"12","preprint":false}],"dataset_size":"1.1 TB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-13055"}}