{"EMPIAR-13031":{"imagesets":[{"segmentations":[],"name":"cryoCARE-denoised bin4 tomograms of HEK293 cells","directory":"data/cryoCARE","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":15,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":7.884,"pixel_height":7.884,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"CryoCARE denoised bin4 tomograms of HEK293 cells. Denoising was performed on even and odd frames. Tomograms were reconstructed using weighted back-projection (WBP) implemented in AreTomo2.","image_width":"1024","image_height":"1024"},{"segmentations":[],"name":"Processed tilt series with alignment files for HEK293 cells","directory":"data/TiltSeries","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":15,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED 16 BIT INTEGER","pixel_width":1.971,"pixel_height":1.971,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Aligned, sorted, and cleaned tilt series (prior to and after dose-filtering), organized in separate folders. Each tilt series folder includes acquisition metadata (.mrc.mdoc), tilt angles (.rawtlt), and GCTF CTF estimation output (.star) files. An AreTomo subfolder within each tilt series contains AreTomo2 alignment (.aln) and IMOD transform (.xf) files used for weighted back-projection reconstruction.","image_width":"4096","image_height":"4096"}],"workflow_file":null,"grant_references":[{"funding_body":"Max Planck Society","code":"NA","country":"Germany"}],"version_history":[],"title":"Systematic membrane thickness variation across cellular organelles revealed by cryo-ET","principal_investigator":[{"author_orcid":"0000-0002-7397-1321","middle_name":null,"organization":"Max Planck Institute of Biophysics","street":"Max-von-Laue-Straße 3","town_or_city":"Frankfurt am Main","state_or_province":"Hessen","post_or_zip":"60438","telephone":null,"fax":null,"first_name":"Martin","last_name":"Beck","email":"martin.beck [at] biophys.mpg.de","country":"Germany","entry":"EMPIAR-13031"}],"status":"REL","deposition_date":"2025-10-06","release_date":"2025-10-29","obsolete_date":null,"update_date":"2025-10-29","corresponding_author":{"author":{"author_orcid":"0000-0002-7397-1321","middle_name":null,"organization":"Max Planck Institute of Biophysics","street":"Max-von-Laue-Straße 3","town_or_city":"Frankfurt am Main","state_or_province":"Hessen","post_or_zip":"60438","first_name":"Martin","last_name":"Beck","country":"Germany"}},"authors":[{"author":{"name":"Glushkova D","author_orcid":"0000-0001-6077-7338"}},{"author":{"name":"Boehm S","author_orcid":"0009-0005-1690-9125"}},{"author":{"name":"Beck M","author_orcid":"0000-0002-7397-1321"}}],"cross_references":["EMD-55310","EMD-55308"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Glushkova D","author_orcid":"0000-0001-6077-7338"},{"name":"Boehm S","author_orcid":"0009-0005-1690-9125"},{"name":"Beck M","author_orcid":"0000-0002-7397-1321"}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Systematic membrane thickness variation across cellular organelles revealed by cryo-ET","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":null,"pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Journal of Cell Biology","journal_abbreviation":"JCB","issue":null,"preprint":false}],"dataset_size":"97.9 GB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-13031"}}