{"EMPIAR-13009":{"imagesets":[{"segmentations":[],"name":"Unaligned multi-frame micrographs of wild-type nephrocytes displaying slit diaphragms","directory":"data/frames","category":"micrographs - multiframe","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":52,"frames_per_image":17,"frame_range_min":16,"frame_range_max":19,"voxel_type":"SIGNED BYTE","pixel_width":1.339,"pixel_height":1.339,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unaligned multi-frame micrographs acquired in super-resolution mode (pixel size 1.34A), with 41-58 micrographs per tilt-series. The corresponding .mdoc files containing the metadata for each tilt-series are in the subdirecory \"mdoc\", following the naming tomoXX.mrc.mdoc, with XX corresponding to the tilt-series ID.","image_width":"11520","image_height":"8184"},{"segmentations":[],"name":"Unaligned tilt-series and alignment metadata","directory":"data/tilt_series_alignment","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":17,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":2.679,"pixel_height":2.679,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unaligned tilt-series (tomoXX.st) and IMOD's etomo alignment metadata for each tilt-series (tomoXX.xf, tomoXX.tlt). XX corresponds to the tilt-series ID.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Reconstructed tomograms of wild-type nephrocytes displaying slit diaphragms","directory":"data/tomograms","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":17,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":10.72,"pixel_height":10.72,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Reconstructed volumes of wild-type nephrocytes displaying slit diaphragms (rec_tomoXX.mrc, XX corresponds to tilt-series IDs).","image_width":"1024","image_height":"1440"}],"workflow_file":null,"grant_references":[{"funding_body":"German Research Foundation (DFG)","code":"GRK 2566/1, CRC 1192, GR3933/1-1, TRR- 422, FR 1653/14-1, HE 7456/7-1, SFB 1453/431984000, HE 7456/6-1","country":"Germany"}],"version_history":[],"title":"Cryo electron tomography of wild-type Drosophila nephrocytes","principal_investigator":[{"author_orcid":"0000-0002-8067-6611","middle_name":"S.","organization":"Buchmann Institute for Molecular Life Sciences and Institute of Biophysics, Goethe University Frankfurt","street":null,"town_or_city":"Frankfurt am Main","state_or_province":null,"post_or_zip":"60438","telephone":null,"fax":null,"first_name":"Achilleas","last_name":"Frangakis","email":"achilleas.frangakis [at] biophysik.org","country":"Germany","entry":"EMPIAR-13009"},{"author_orcid":"0000-0002-0441-7749","middle_name":null,"organization":"Renal Division, Department of Medicine, Faculty of Medicine and Medical Center - University of Freiburg","street":"Breisacher Str. 113","town_or_city":"Freiburg","state_or_province":"Baden-Württemberg","post_or_zip":"79106","telephone":null,"fax":null,"first_name":"Tobias","last_name":"Hermle","email":"tobias.hermle [at] uniklinik-freiburg.de","country":"Germany","entry":"EMPIAR-13009"}],"status":"REL","deposition_date":"2025-08-27","release_date":"2025-12-07","obsolete_date":null,"update_date":"2025-12-07","corresponding_author":{"author":{"author_orcid":"0000-0002-8067-6611","middle_name":"S.","organization":"Buchmann Institute for Molecular Life Sciences and Institute of Biophysics, Goethe University Frankfurt","street":"Max-von-Laue Str. 15","town_or_city":"Frankfurt am Main","state_or_province":"Hessen","post_or_zip":"60438","first_name":"Achilleas","last_name":"Frangakis","country":"Germany"}},"authors":[{"author":{"name":"Moser D","author_orcid":"0009-0008-4443-4341"}},{"author":{"name":"Lang K","author_orcid":"0009-0003-6288-7794"}},{"author":{"name":"Birtasu AN","author_orcid":"0009-0002-4290-0202"}},{"author":{"name":"Grahammer F","author_orcid":"0000-0002-7851-754X"}},{"author":{"name":"Helmstaedter M","author_orcid":"0000-0001-6027-0094"}},{"author":{"name":"Scheffer MP","author_orcid":"0000-0001-7067-8958"}},{"author":{"name":"Hermle T","author_orcid":"0000-0002-0441-7749"}},{"author":{"name":"Frangakis AF","author_orcid":"0000-0002-8067-6611"}}],"cross_references":["EMD-53557"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Moser D","author_orcid":"0009-0008-4443-4341"},{"name":"Lang K","author_orcid":"0009-0003-6288-7794"},{"name":"Birtasu AN","author_orcid":"0009-0002-4290-0202"},{"name":"Grahammer F","author_orcid":"0000-0002-7851-754X"},{"name":"Helmstaedter M","author_orcid":"0000-0001-6027-0094"},{"name":"Scheffer MP","author_orcid":"0000-0001-7067-8958"},{"name":"Hermle T","author_orcid":"0000-0002-0441-7749"},{"name":"Frangakis AF","author_orcid":"0000-0002-8067-6611"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"The slit diaphragm in Drosophila exhibits a bilayered, fishnet architecture","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":"10.1038/s41467-025-64347-5","pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"1.5 TB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-13009"}}