{"EMPIAR-12955":{"imagesets":[{"segmentations":[],"name":"ssET tomogram and segmentation dataset of a Plasmodium berghei ookinete","directory":"data","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":1423,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":22.36,"pixel_height":22.36,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"This dataset contains a stitched ssET tomogram of a mature Plasmodium berghei\nookinete and a corresponding segmentation with annotated organelles and subcellular\nstructures.","image_width":"1477","image_height":"3789"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cellular hallmarks from volume electron microscopy reveal development progression of Plasmodium ookinetes","principal_investigator":[{"author_orcid":"0000-0002-8332-6668","middle_name":null,"organization":"Centre for Integrative Infectious Disease Research (CIID), Heidelberg University","street":"Im Neuenheimer Feld 344","town_or_city":"Heidelberg","state_or_province":"Baden-Wuerttemberg","post_or_zip":"69120","telephone":"+49-6221-566537","fax":null,"first_name":"Friedrich","last_name":"Frischknecht","email":"freddy.frischknecht [at] med.uni-heidelberg.de","country":"Germany","entry":"EMPIAR-12955"},{"author_orcid":"0000-0001-8027-1836","middle_name":null,"organization":"Cell Biology and Biophysics, EMBL","street":"Meyerhofstraße 1","town_or_city":"Heidelberg","state_or_province":"Baden-Wuerttemberg","post_or_zip":"69117","telephone":null,"fax":null,"first_name":"Yannick","last_name":"Schwab","email":"yannik.schwab [at] embl.de","country":"Germany","entry":"EMPIAR-12955"}],"status":"REL","deposition_date":"2025-09-03","release_date":"2026-09-09","obsolete_date":null,"update_date":"2026-09-09","corresponding_author":{"author":{"author_orcid":"0000-0002-8332-6668","middle_name":null,"organization":"Centre for Integrative Infectious Disease Research (CIID), Heidelberg University","street":"Im Neuenheimer Feld 344","town_or_city":"Heidelberg","state_or_province":"Baden-Wuerttemberg","post_or_zip":"69120","first_name":"Friedrich","last_name":"Frischknecht","country":"Germany"}},"authors":[{"author":{"name":"Hildenbrand K","author_orcid":"0000-0002-9329-9253"}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[{"name":"EMPIAR-12951"}],"citation":[{"authors":[{"name":"Darif N","author_orcid":"0000-0001-9254-6454"}],"editors":[{"name":"Hildenbrand K","author_orcid":"0000-0002-9329-9253"},{"name":"Chookajorn T","author_orcid":"0000-0003-2876-6203"},{"name":"Dorner LP","author_orcid":"0000-0002-8120-7155"},{"name":"Hériché JK","author_orcid":"0000-0001-6867-9425"},{"name":"Henriksson S","author_orcid":"0000-0003-1615-0583"},{"name":"Funaya C","author_orcid":"0000-0003-1375-1287"},{"name":"Hentzschel F","author_orcid":"0000-0002-9812-0128"},{"name":"Sandblad L","author_orcid":"0000-0003-3492-3287"},{"name":"Billker O","author_orcid":"0000-0003-1716-168X"},{"name":"Schwab Y","author_orcid":"0000-0001-8027-1836"},{"name":"Frischknecht F","author_orcid":"0000-0002-8332-6668"}],"published":false,"j_or_nj_citation":true,"title":"Cellular hallmarks from volume electron microscopy reveal development progression of Plasmodium ookinetes","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":null,"pubmedid":null,"details":"This dataset contains a full cryo-electron tomogram of a mature Plasmodium berghei wild type ookinete and the corresponding segmentation of 22 annotated organelles and subcellular structures. The tomogram was acquired on a Tecnai F20 TEM (FEI) at 200 kV using an Eagle CCD camera with a tilt range of -60° to +60° and 2° increments. Reconstruction and segmentation were performed in IMOD. The dataset was generated in the course of a Bachelor thesis at Heidelberg University (2023).","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Advanced Science","journal_abbreviation":"","issue":null,"preprint":false}],"dataset_size":"7.4 GB","experiment_type":"ssET","scale":"cell","entry_doi":"10.6019/EMPIAR-12955"}}