{"EMPIAR-12875":{"imagesets":[{"segmentations":[],"name":"Motion corrected micrographs of alpha-LTX","directory":"data/aLTX_mrcs_4_EMPIAR","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":87895,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"16 BIT FLOAT","pixel_width":0.58,"pixel_height":0.58,"micrographs_file_pattern":"data/aLTX_mrcs_4_EMPIAR/job*/*_EER.mrc","picked_particles_file_pattern":"data/aLTX_Coordinates_*_4_EMPIAR/Coordinates_*/*_EER.box","picked_particles_directory":"data/aLTX_Coordinates_Prepore_4_EMPIAR","details":"Motion corrected micrographs of alpha-LTX. The micrographs are the motion corrected average of 49-51 movie fractions, which were themself created from 918-1225 EER movie frames. The accumulated electron dose was ~50 electrons per square Angstroem. The coordinates for the aLTX Pore and Prepore state are located in the respective folders data/aLTX_Coordinates_Pore_4_EMPIAR and data/aLTX_Coordinates_Prepore_4_EMPIAR, Picked particle positions are in corresponding .box text files (with X and Y coordinates in 1st and second column respectively). The movies in Falcon 4i Electron Event Representation (EER) are in the folder data/aLTX_EERs_4_EMPIAR.","image_width":"4096","image_height":"4096"},{"segmentations":[],"name":"Unaligned Falcon 4i movies in Electron Event Representation (EER)","directory":"data/aLTX_EERs_4_EMPIAR","category":"micrographs - multiframe","header_format":"EER","data_format":"EER","num_images_or_tilt_series":87915,"frames_per_image":0,"frame_range_min":null,"frame_range_max":null,"voxel_type":"BIT","pixel_width":0.145,"pixel_height":0.145,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Movies in Falcon 4i Electron Event Representation (EER).","image_width":"16384","image_height":"16384"},{"segmentations":[],"name":"Particle Coordinates of the aLTX prepore state in Sphire .box format","directory":"data/aLTX_Coordinates_Prepore_4_EMPIAR","category":"picked particles - single frame - unprocessed","header_format":"SPIDER","data_format":"SPIDER","num_images_or_tilt_series":442105,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":0.58,"pixel_height":0.58,"micrographs_file_pattern":"data/aLTX_mrcs_4_EMPIAR/job*/FoilHole_*","picked_particles_file_pattern":"data/aLTX_Coordinates_Prepore_*/Coordinates_Prepore_*/*.box","picked_particles_directory":"data/aLTX_Coordinates_Prepore_*","details":"Particle positions of aLTX Prepore in corresponding .box text files (with X and Y coordinates in 1st and second column respectively, as used by the software package SPHIRE).","image_width":"4096","image_height":"4096"},{"segmentations":[],"name":"Particle Coordinates of the aLTX Pore state in Sphire .box format","directory":"data/aLTX_Coordinates_Pore_4_EMPIAR","category":"picked particles - single frame - unprocessed","header_format":"SPIDER","data_format":"SPIDER","num_images_or_tilt_series":70971,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":0.58,"pixel_height":0.58,"micrographs_file_pattern":"data/aLTX_mrcs_4_EMPIAR/job*/FoilHole_*","picked_particles_file_pattern":"data/aLTX_Coordinates_Pore_*/Coordinates_Pore_*/*.box","picked_particles_directory":"data/aLTX_Coordinates_Pore_*","details":"Particle positions of aLTX Pore in corresponding .box text files (with X and Y coordinates in 1st and second column respectively, as used by the software package SPHIRE).","image_width":"4096","image_height":"4096"}],"workflow_file":null,"grant_references":[{"funding_body":"German Research Foundation (DFG)","code":"SFB1348 (Project A15( to C.G.)","country":"Germany"}],"version_history":[],"title":"Electron Cryomicroscopy of alpha-Latrotoxin","principal_investigator":[{"author_orcid":"0000-0002-4922-4545","middle_name":null,"organization":"Center for Soft Nanoscience and Institute of Medical Physics and Biophysics","street":"Busso-Peus-Str. 10","town_or_city":"Münster","state_or_province":"NRW","post_or_zip":"48149","telephone":"+49 251 83 34444","fax":null,"first_name":"Christos","last_name":"Gatsogiannis","email":"christos.gatsogiannis [at] uni-muenster.de","country":"Germany","entry":"EMPIAR-12875"}],"status":"REL","deposition_date":"2024-09-26","release_date":"2025-10-29","obsolete_date":null,"update_date":"2025-10-29","corresponding_author":{"author":{"author_orcid":"0000-0002-4922-4545","middle_name":null,"organization":"Center for Soft Nanoscience and Institute of Medical Physics and Biophysics","street":"Busso-Peus-Str. 10","town_or_city":"Münster","state_or_province":"NRW","post_or_zip":"48149","first_name":"Christos","last_name":"Gatsogiannis","country":"Germany"}},"authors":[{"author":{"name":"Klink B","author_orcid":"0000-0002-0946-4456"}},{"author":{"name":"Kalyankumar KS","author_orcid":"0000-0002-0588-893X"}},{"author":{"name":"Gatsogiannis C","author_orcid":"0000-0002-4922-4545"}}],"cross_references":["EMD-51494","EMD-51465","EMD-51469","EMD-51475","EMD-51468","EMD-51473","EMD-51492","EMD-51474","EMD-51472","EMD-51467"],"biostudies_references":[],"idr_references":[],"empiar_references":[{"name":"EMPIAR-12308"}],"citation":[{"authors":[{"name":"Klink B","author_orcid":"0000-0002-0946-4456"},{"name":"Alavizargar A","author_orcid":"0000-0002-3358-6744"},{"name":"Kalyankumar KS","author_orcid":"0000-0002-0588-893X"},{"name":"Chen M","author_orcid":"0000-0002-7668-3974"},{"name":"Heuer A","author_orcid":"0000-0003-2592-0287"},{"name":"Gatsogiannis C","author_orcid":"0000-0002-4922-4545"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Molecular mechanism of α-latrotoxin action","volume":null,"country":"Germany","first_page":null,"last_page":null,"year":"2024","language":"English","doi":"10.1101/2024.03.06.583760","pubmedid":null,"details":"The EER movies are the unmodified raw movies with a total electron dose of 50 electrons per squared Angstrom.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"bioRxiv","journal_abbreviation":"bioRxiv","issue":null,"preprint":true},{"authors":[{"name":"Klink BU","author_orcid":"0000-0002-0946-4456"},{"name":"Alavizargar A","author_orcid":"0000-0002-3358-6744"},{"name":"Kalyankumar KS","author_orcid":"0000-0002-0588-893X"},{"name":"Chen M","author_orcid":"0000-0002-7668-3974"},{"name":"Heuer A","author_orcid":"0000-0003-2592-0287"},{"name":"Gatsogiannis C","author_orcid":"0000-0002-4922-4545"}],"editors":[{"name":" ","author_orcid":null}],"published":true,"j_or_nj_citation":true,"title":"Structural basis of α-latrotoxin transition to a cation-selective pore","volume":"15","country":"","first_page":null,"last_page":null,"year":"2024","language":"English","doi":"10.1038/s41467-024-52635-5","pubmedid":"39362850","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature communications","journal_abbreviation":"Nat Commun","issue":"1","preprint":false}],"dataset_size":"27.8 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["9go9"],"entry_doi":"10.6019/EMPIAR-12875"}}