{"EMPIAR-12814":{"imagesets":[{"segmentations":[],"name":"Unaligned, gain corrected movies","directory":"data/Images-Disc1","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":22001,"frames_per_image":40,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":0.648,"pixel_height":0.648,"micrographs_file_pattern":"data/Images-Disc1/GridSquare_*/Data/*_fractions.tiff","picked_particles_file_pattern":"data/P306-J163_particles_exported_coords-only_cleaned-up.star","picked_particles_directory":"","details":"# Raw movies info\n\nmicroscope: Solna Krios β\ndate: 2024-03-29\n\nacceleration voltage: 300 kV\nspherical aberration: 2.7 mm\ntotal dose: 40 e/A2\npixel size: 0.648 A/px\n\nGain correction already applied.\n\nOptics groups were assigned based on the beam shift group ID written by EPU in file names\n(5th \"field\" as delimited by underscores, and numbering from 1 at \"FoilHole\"):\n\nFoilHole_29301454_Data_29237750_5_20240330_041019_fractions.tiff\n\nSo in this specific file name, the field encoding beam shift group has value 5.\n\nThe .cs file from the CTF estimation job is provided, in case you'd like to convert it to star: J18_exposures_exported.cs\n\n\n# Particle coordinates info\n\nThe particle coordinates star file was generated from file J163_intersect_B_exported.cs (from CryoSPARC), using csparc2star.py from pyem v0.66, as follows:\n\ncsparc2star.py --inverty --flipy J163_intersect_B_exported.cs P306-J163_particles_exported.star\n\nSuperfluous columns in the resulting star file were then dropped using teamtomo/starfile.py.\n\nThe UIDs and suffixes from CryoSPARC were removed, so the resulting file names match the file names of the raw movies (but with .mrc instead of .tiff). If your motion correction writes different file names, you will need to make matching names either by editing the star file or by creating symlinks with names as in the star file.","image_width":"5760","image_height":"4092"}],"workflow_file":null,"grant_references":[{"funding_body":"German Research Foundation (DFG)","code":"SFB1078 - TP A5","country":"Germany"},{"funding_body":"Swedish Research Council","code":"2019-03700_VR","country":"Sweden"},{"funding_body":"Swedish Research Council for Sustainable Development","code":"2019-01171_Formas","country":"Sweden"},{"funding_body":"German Research Foundation (DFG)","code":"EXC 2008/1-390540038","country":"Germany"}],"version_history":[],"title":"Single-particle cryo-EM dataset of monomeric Photosystem I structure at 1.8 A resolution","principal_investigator":[{"author_orcid":"0000-0001-5740-926X","middle_name":null,"organization":"Uppsala University","street":"Lägerhyddsvägen 1","town_or_city":"Uppsala","state_or_province":null,"post_or_zip":"752 37","telephone":null,"fax":null,"first_name":"Cecilia","last_name":"Blikstad","email":"cecilia.blikstad [at] kemi.uu.se","country":"Sweden","entry":"EMPIAR-12814"}],"status":"REL","deposition_date":"2024-04-18","release_date":"2026-10-21","obsolete_date":null,"update_date":"2026-10-21","corresponding_author":{"author":{"author_orcid":"0000-0003-3405-6021","middle_name":null,"organization":"Uppsala University","street":"Lägerhyddsvägen 1","town_or_city":"Uppsala","state_or_province":null,"post_or_zip":"752 37","first_name":"Guillaume","last_name":"Gaullier","country":"Sweden"}},"authors":[{"author":{"name":"Gaullier G","author_orcid":"0000-0003-3405-6021"}},{"author":{"name":"Boyka J","author_orcid":"0009-0005-3869-7768"}},{"author":{"name":"Zouni A","author_orcid":"0000-0003-0561-6990"}},{"author":{"name":"Blikstad C","author_orcid":"0000-0001-5740-926X"}}],"cross_references":["EMD-53120"],"biostudies_references":[],"idr_references":[],"empiar_references":[{"name":"EMPIAR-13422"}],"citation":[{"authors":[{"name":"Boyka J","author_orcid":"0009-0005-3869-7768"},{"name":"Gaullier G","author_orcid":"0000-0003-3405-6021"},{"name":"Forsman J","author_orcid":"0000-0002-5111-8901"},{"name":"Graça AT","author_orcid":"0000-0002-5502-1744"},{"name":"Golub M","author_orcid":"0000-0001-5495-9186"},{"name":"Croy N","author_orcid":"0000-0002-1360-0174"},{"name":"Wood K","author_orcid":"0000-0002-8774-8112"},{"name":"Duff AP","author_orcid":"0000-0003-3586-360X"},{"name":"Moir M","author_orcid":"0000-0003-1684-3160"},{"name":"Pieper J","author_orcid":"0000-0001-5995-9660"},{"name":"Messinger J","author_orcid":"0000-0003-2790-7721"},{"name":"Müh F","author_orcid":"0000-0002-8818-2616"},{"name":"Zouni A","author_orcid":"0000-0003-0561-6990"},{"name":"Blikstad C","author_orcid":"0000-0001-5740-926X"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"High-resolution structure of monomeric photosystem I from Thermosynechococcus vestitus","volume":"164","country":"","first_page":null,"last_page":null,"year":"2026","language":null,"doi":"10.1007/s11120-026-01237-x","pubmedid":"42881318","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Photosynthesis Research","journal_abbreviation":"Photosynth Res","issue":"6","preprint":false}],"dataset_size":"5.3 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["9qfp"],"entry_doi":"10.6019/EMPIAR-12814"}}