{"EMPIAR-12695":{"imagesets":[{"segmentations":[],"name":"Unaligned multi-frame micrographs of immature TBEV (Kuutsalo-14) stored in *.tar.gz archives, data set 1","directory":"data/dataset1","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":26990,"frames_per_image":50,"frame_range_min":1,"frame_range_max":50,"voxel_type":"UNSIGNED BYTE","pixel_width":1.1041,"pixel_height":1.1041,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Microscope Details: \nAccelerating voltage: 300 kV\nSpherical aberration: 2.7 mm\n\nData acquisition details:\nNominal Magnification: 81,000X\nPixel Size: 1.1041Å\nDose Rate: 16 e/px/s\nExposure: 3.3s (247/75)\nTotal Dose: ~43e/Ų\nNumber of Frames: 50\nTarget Defocuses: -0.7um to -2.7um at 0.2um step\nFile format: Gain Normalized LZW compressed TIFF","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Unaligned multi-frame micrographs of immature TBEV (Kuutsalo-14) stored in *.tar.gz archives, data set 2","directory":"data/dataset2","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":24271,"frames_per_image":50,"frame_range_min":1,"frame_range_max":50,"voxel_type":"UNSIGNED BYTE","pixel_width":1.0859,"pixel_height":1.0859,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Microscope Details: \nAccelerating voltage: 300 kV\nSpherical aberration: 2.7 mm\n\nData acquisition details:\nNominal Magnification: 81000 X\nDefocus Range: -0.6 um to -2.0 um\nDefocus Step: 0.2 pm\nDose Rate: 19.514 e/px/s\nDose Rate: 16.549 e/square angstrom⁄s\nExposure Time: 2.6 s\nTotal Dose: 43.027 e/A2\nDose Fractions (type): 50 (Physical Pixel TIFF LZW Gain normalized)\nDose per Fraction: 0.861 e/square angstrom\n\nSoftware: EPU v2.12.1\nSelection Type: Automated\nAcquisition Mode: Faster Acquisition","image_width":"5760","image_height":"4092"}],"workflow_file":null,"grant_references":[{"funding_body":"Swedish Research Council","code":"2018-05851","country":"Sweden"},{"funding_body":"Academy of Finland","code":"315950","country":"Finland"},{"funding_body":"Sigrid Juselius Foundation","code":"95-7202-38","country":"Finland"},{"funding_body":"European Commission","code":"799929","country":"Finland"}],"version_history":[],"title":"CryoEM of purified immature tick borne encephalitis virus particles, strain Kuutsalo-14","principal_investigator":[{"author_orcid":"0000-0001-7060-5871","middle_name":"Jane","organization":"Faculty of Biological and Environmental Sciences, Molecular and Integrative Bioscience Research Programme and Helsinki Institute of Life Sciences-Institute of Biotechnology, University of Helsinki, Helsinki, Finland","street":"Viikinakaari 9","town_or_city":"Helsinki","state_or_province":"Uusimaa","post_or_zip":"00790","telephone":"+358 2941 59563","fax":null,"first_name":"Sarah","last_name":"Butcher","email":"sarah.butcher [at] helsinki.fi","country":"Finland","entry":"EMPIAR-12695"}],"status":"REL","deposition_date":"2024-08-02","release_date":"2025-05-27","obsolete_date":null,"update_date":"2025-05-27","corresponding_author":{"author":{"author_orcid":"0000-0001-7060-5871","middle_name":"Jane","organization":"Faculty of Biological and Environmental Sciences, Molecular and Integrative Bioscience Research Programme and Helsinki Institute of Life Sciences-Institute of Biotechnology, University of Helsinki, Helsinki, Finland","street":"Viikinakaari 9","town_or_city":"Helsinki","state_or_province":"Uusimaa","post_or_zip":"00790","first_name":"Sarah","last_name":"Butcher","country":"Finland"}},"authors":[{"author":{"name":"Anastasina M","author_orcid":"0000-0002-4555-6446"}},{"author":{"name":"Domanska A","author_orcid":"0000-0002-3772-6003"}},{"author":{"name":"Pulkkinen LIA","author_orcid":"0000-0002-3919-2498"}},{"author":{"name":"Butcher SJ","author_orcid":"0000-0001-7060-5871"}}],"cross_references":["EMD-17809","EMD-17808"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Anastasina M","author_orcid":"0000-0002-4555-6446"},{"name":"Füzik T","author_orcid":"0000-0002-1190-0210"},{"name":"Domanska A","author_orcid":"0000-0002-3772-6003"},{"name":"Pulkkinen LIA","author_orcid":"0000-0002-3919-2498"},{"name":"Šmerdová L","author_orcid":"0000-0001-8043-0921"},{"name":"Formanová PP","author_orcid":"0009-0002-6086-1665"},{"name":"Straková P","author_orcid":"0000-0002-3130-933X"},{"name":"Nováček J","author_orcid":"0000-0003-4013-3898"},{"name":"Růžek D","author_orcid":"0000-0003-4655-2380"},{"name":"Plevka P","author_orcid":"0000-0003-4215-3315"},{"name":"Butcher SJ","author_orcid":"0000-0001-7060-5871"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"The structure of immature tick-borne encephalitis virus supports the collapse model of flavivirus maturation","volume":"10","country":"United States","first_page":"eadl1888","last_page":"eadl1888","year":"2024","language":"English","doi":"10.1126/sciadv.adl1888","pubmedid":"38959313","details":"The micrographs are average, without any realignment, of 50 raw movie frames (43.027 electrons per squared Angstrom accumulated over 2.6 s exposure)","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Science advances","journal_abbreviation":"Sci Adv","issue":"27","preprint":false}],"dataset_size":"26.7 TB","experiment_type":"EMDB","scale":"virus","related_pdb_entries":["8ppq"],"entry_doi":"10.6019/EMPIAR-12695"}}