{"EMPIAR-12627":{"imagesets":[{"segmentations":[],"name":"Aligned Fib-SEM image stacks of 3 different continuously fed RSD Host cells","directory":"data/Host-RSD/Host-RSD-Cont.Fed","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":3598,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Pixel size for Cell 1 is 6nm with a total of 3598 frames/slices. Cell 2 and Cell 3 are caputred at 5nm resolution with 3280 and 2659 frames respectively. All stacks were aligned and cropped. For segmentation, voxel type was reduced to 8 bits and further binned if necessary (Indicated in supplementary table S3 of the article)","image_width":null,"image_height":null},{"segmentations":[],"name":"Aligned Fib-SEM image stacks of 3 different RSD Host cells starved for 9 weeks","directory":"data/Host-RSD/Host-RSD-Starved9week","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2244,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"BIT","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Pixel size for Cell 1, 2 and 3 is 8nm with 695, 1874 and 2244 frames respectively. All stacks were aligned, cropped and converted from 16 bit to 8 bit voxel type. Cell 1 and 3 are inverted. Any binning done during segmentation are indicated in supplementary table S3 of the article","image_width":null,"image_height":null},{"segmentations":[],"name":"Aligned Fib-SEM image stacks of 5 different prey /Phaeocystis antarctica/ cells in possibly dividing stages","directory":"data/Prey-Phaant/Prey-Phaant-Divding","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":755,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"BIT","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"All cells were captured with a 6nm resolution with about 660-755 frames. All stacks were aligned and cropped. Cells 4 and 5 are inverted and converted to 8 bit voxel type while cells 1-3 remain as 16 bit voxel type.\nFor segmentation, voxel type for all cells was reduced to 8 bits","image_width":null,"image_height":null},{"segmentations":[],"name":"Aligned Fib-SEM image stacks of 7 different prey /Phaeocystis antarctica/ cells","directory":"data/Prey-Phaant/Prey-Phaant-NonDividing","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":688,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"BIT","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"All cells were captured with a 6nm resolution with about 462-688 frames. All stacks were aligned and cropped. Cells 4-7 are inverted and converted to 8 bit voxel type while cells 1-3 remain as 16 bit voxel type.\nFor segmentation, voxel type was reduced to 8 bits for all cells","image_width":null,"image_height":null}],"workflow_file":null,"grant_references":[{"funding_body":"Agence Nationale de la Recherche (ANR)","code":"ANR-21-CE02-0030","country":"France"},{"funding_body":"Agence Nationale de la Recherche (ANR)","code":"ANR-22-PEEL-0014","country":"France"},{"funding_body":"European Research Council (ERC)","code":"101088661","country":"France"},{"funding_body":"Gordon and Betty Moore Foundation","code":"GBMF11532","country":"United States"}],"version_history":[],"title":"Fib-SEM stacks for Prey (Phaeocystis antarctica) and Host (Ross Sea Dinoflagellate; RSD)","principal_investigator":[{"author_orcid":"0000-0002-5337-2209","middle_name":"Kedige","organization":"Photosymbiosis, PCV, CNRS-CEA","street":"17 rue des Martyrs","town_or_city":"Grenoble","state_or_province":null,"post_or_zip":"38054","telephone":null,"fax":null,"first_name":"Ananya","last_name":"Rao","email":"raoananya98 [at] gmail.com","country":"France","entry":"EMPIAR-12627"}],"status":"REL","deposition_date":"2025-03-16","release_date":"2025-05-22","obsolete_date":null,"update_date":"2025-05-22","corresponding_author":{"author":{"author_orcid":"0000-0002-4343-8358","middle_name":null,"organization":"Photosymbiosis, PCV, CNRS-CEA","street":"17 rue des Martyrs","town_or_city":"Grenoble","state_or_province":"Isere","post_or_zip":"38054","first_name":"Johan","last_name":"Decelle","country":"France"}},"authors":[{"author":{"name":"Rao AK","author_orcid":"0000-0002-5337-2209"}},{"author":{"name":"Gallet B","author_orcid":"0000-0001-8758-7681"}},{"author":{"name":"Jouneau PH","author_orcid":"0000-0003-0350-4901"}},{"author":{"name":"Decelle J","author_orcid":"0000-0002-4343-8358"}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Rao AK","author_orcid":"0000-0002-5337-2209"},{"name":"Yee D","author_orcid":"0000-0002-2085-5538"},{"name":"Chevalier F","author_orcid":null},{"name":"Seifi M","author_orcid":"0009-0008-9276-5225"},{"name":"Jug F","author_orcid":"0000-0002-8499-5812"},{"name":"Deschamps J","author_orcid":"0000-0001-8462-2883"},{"name":"Wu TD","author_orcid":"0000-0002-6398-0363"},{"name":"Gast R","author_orcid":"0000-0003-3875-3975"},{"name":"Jouneau PH","author_orcid":"0000-0003-0350-4901"},{"name":"Decelle J","author_orcid":"0000-0002-4343-8358"},{"name":"Olivetta M","author_orcid":"0000-0002-9451-0663"},{"name":"Dudin O","author_orcid":"0000-0002-6673-3149"},{"name":"Gallet B","author_orcid":"0000-0001-8758-7681"},{"name":"Hehenberger E","author_orcid":"0000-0001-7810-1336"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Hijacking and Integration of Algal Plastids and Mitochondria in a Polar Planktonic Host","volume":null,"country":"France","first_page":null,"last_page":null,"year":"2024","language":"English","doi":"10.1101/2024.10.20.619283","pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"bioRxiv","journal_abbreviation":"bioRxiv","issue":null,"preprint":true},{"authors":[{"name":"Rao AK","author_orcid":null},{"name":"Yee D","author_orcid":null},{"name":"Chevalier F","author_orcid":null},{"name":"LeKieffre C","author_orcid":null},{"name":"Pavie M","author_orcid":null},{"name":"Olivetta M","author_orcid":null},{"name":"Dudin O","author_orcid":null},{"name":"Gallet B","author_orcid":null},{"name":"Hehenberger E","author_orcid":null},{"name":"Seifi M","author_orcid":null},{"name":"Jug F","author_orcid":null},{"name":"Deschamps J","author_orcid":null},{"name":"Wu TD","author_orcid":null},{"name":"Gast R","author_orcid":null},{"name":"Jouneau PH","author_orcid":null},{"name":"Decelle J","author_orcid":null}],"editors":[{"name":" ","author_orcid":null}],"published":true,"j_or_nj_citation":true,"title":"Hijacking and integration of algal plastids and mitochondria in a polar planktonic host","volume":null,"country":"","first_page":null,"last_page":null,"year":"2025","language":"English","doi":"10.1016/j.cub.2025.03.076","pubmedid":"40250433","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Current biology : CB","journal_abbreviation":"Curr Biol","issue":null,"preprint":false}],"dataset_size":"272.6 GB","experiment_type":"FIB-SEM","scale":"cell","entry_doi":"10.6019/EMPIAR-12627"}}