{"EMPIAR-12612":{"imagesets":[{"segmentations":[],"name":"Spinacia oleracea, isolated chloroplast; Cryo-ET sessions; Unaligned frames and .mdocs","directory":"data/raw_data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2028,"frames_per_image":10,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED 16 BIT INTEGER","pixel_width":3.52,"pixel_height":3.52,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Directory contains raw frames and .mdoc files corresponding to 30+ tomograms acquired over multiple sessions and selected for quality. Collected on Titan G1 with Bioquantum energy filter and K2 Summit detector.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Spinacia oleracea, isolated chloroplasts; Denoised tomograms","directory":"data/denoised_tomos","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":18,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":14.08,"pixel_height":14.08,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms of isolated Spinach chloroplasts denoised using CryoCARE from odd- and even-frames.","image_width":"928","image_height":"928"},{"segmentations":[],"name":"Spinacia oleracea, isolated chloroplasts; Membrane segmentations","directory":"data/segmentations","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":9,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":14.08,"pixel_height":14.08,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Selected segmentations of tomograms of isolated chloroplasts from Spinach. Membranes present in the volumes were detected and segmented using MemBrain-seg program.","image_width":"928","image_height":"928"}],"workflow_file":null,"grant_references":[{"funding_body":"Human Frontier Science Program (HFSP)","code":"RGP0005/2021","country":"Switzerland"}],"version_history":[],"title":"Molecular architecture of thylakoid membranes within intact spinach chloroplasts","principal_investigator":[{"author_orcid":"0000-0002-0941-4387","middle_name":null,"organization":"Biozentrum, University of Basel","street":null,"town_or_city":"Basel","state_or_province":null,"post_or_zip":"4053","telephone":null,"fax":null,"first_name":"Benjamin","last_name":"Engel","email":"ben.engel [at] unibas.ch","country":"Switzerland","entry":"EMPIAR-12612"},{"author_orcid":"0000-0002-1663-0205","middle_name":null,"organization":"University of Sheffield, Sheffield, United Kingdom","street":null,"town_or_city":"Sheffield","state_or_province":null,"post_or_zip":"S10 2TN","telephone":null,"fax":null,"first_name":"Matthew","last_name":"Johnson","email":"matt.johnson [at] sheffield.ac.uk","country":"United Kingdom","entry":"EMPIAR-12612"}],"status":"REL","deposition_date":"2024-11-21","release_date":"2025-05-09","obsolete_date":null,"update_date":"2025-05-09","corresponding_author":{"author":{"author_orcid":"0000-0001-8898-2392","middle_name":null,"organization":"Biozentrum, University of Basel","street":null,"town_or_city":"Basel","state_or_province":null,"post_or_zip":"4051","first_name":"Wojciech","last_name":"Wietrzynski","country":"Switzerland"}},"authors":[{"author":{"name":"Wietrzynski W","author_orcid":"0000-0001-8898-2392"}},{"author":{"name":"Johnson MP","author_orcid":"0000-0002-1663-0205"}},{"author":{"name":"Engel BD","author_orcid":"0000-0002-0941-4387"}}],"cross_references":["EMD-52547","EMD-52543","EMD-52544","EMD-52542","EMD-52548","EMD-52545","EMD-52546"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Wietrzynski W","author_orcid":null},{"name":"Lamm L","author_orcid":null},{"name":"Wood WHJ","author_orcid":null},{"name":"Loukeri MJ","author_orcid":null},{"name":"Malone L","author_orcid":null},{"name":"Peng T","author_orcid":null},{"name":"Johnson MP","author_orcid":null},{"name":"Engel BD","author_orcid":null}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Molecular architecture of thylakoid membranes within intact spinach chloroplasts","volume":null,"country":"Switzerland","first_page":null,"last_page":null,"year":"2024","language":null,"doi":"10.1101/2024.11.24.625035","pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"bioRxiv","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"303.9 GB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-12612"}}