{"EMPIAR-12567":{"imagesets":[{"segmentations":[],"name":"Cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2","directory":"data/movies","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1112,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED BYTE","pixel_width":1.1,"pixel_height":1.1,"micrographs_file_pattern":"data/movies/*.tiff","picked_particles_file_pattern":"","picked_particles_directory":"","details":"","image_width":"11520","image_height":"8184"},{"segmentations":[],"name":"Gain reference for cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2","directory":"data/gainRefer","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"16 BIT FLOAT","pixel_width":1.1,"pixel_height":1.1,"micrographs_file_pattern":"data/gainRefer/K3_gain.mrc","picked_particles_file_pattern":"","picked_particles_directory":"","details":"This gain reference doesn't need rotation and flipping.","image_width":"11520","image_height":"8184"},{"segmentations":[],"name":"Particles for cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2","directory":"data/cryosparc","category":"picked particles - single frame - unprocessed","header_format":"MRCS","data_format":"MRCS","num_images_or_tilt_series":990,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"16 BIT FLOAT","pixel_width":1.1,"pixel_height":1.1,"micrographs_file_pattern":"data/cryosparc/J20/imported_mrcs/*.mrcs","picked_particles_file_pattern":"data/cryosparc/J93/J93_passthrough_particles.cs","picked_particles_directory":"data/cryosparc/J20","details":"The folder cryosparc/J20 is \"Imported particles\" of CryoSPARC-v4.3.1, and the particles is imported from \"Particle extraction\" of relion-v3.1.3.\nThe folder cryosparc/J93 is \"Homogeneous Refinement\" of CryoSPARC-v4.3.1, and this \"Homogeneous Refinement\" which imposed C1 symmetry is at a resolution of 3.34 angstrom.\nThe folder cryosparc/J133 is \"Homogeneous Refinement\" of CryoSPARC-v4.3.1, and this \"Homogeneous Refinement\" which imposed C2 symmetry is at a resolution of 3.15 angstrom.","image_width":"256","image_height":"256"}],"workflow_file":null,"grant_references":[{"funding_body":"National Natural Science Foundation of China (NSFC)","code":"31930017","country":"China"}],"version_history":[],"title":"Cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2","principal_investigator":[{"author_orcid":"0000-0002-2075-4235","middle_name":null,"organization":"State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University","street":null,"town_or_city":"Shanghai","state_or_province":null,"post_or_zip":"200438","telephone":null,"fax":null,"first_name":"Aiwu","last_name":"Dong","email":"aiwudong [at] fudan.edu.cn","country":"China","entry":"EMPIAR-12567"}],"status":"REL","deposition_date":"2025-02-14","release_date":"2026-07-21","obsolete_date":null,"update_date":"2026-07-21","corresponding_author":{"author":{"author_orcid":"0000-0001-6786-9032","middle_name":null,"organization":"State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University","street":null,"town_or_city":"Shanghai","state_or_province":null,"post_or_zip":"200438","first_name":"Youchao","last_name":"Wang","country":"China"}},"authors":[{"author":{"name":"Wang Y","author_orcid":"0000-0001-6786-9032"}},{"author":{"name":"Dong A","author_orcid":"0000-0002-2075-4235"}}],"cross_references":["EMD-62036","EMD-62035"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Wang Y","author_orcid":"0000-0001-6786-9032"}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Structural and functional interrelationships of histone H2A and its variants H2A.Z and H2A.W in Arabidopsis","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":"10.1016/j.str.2025.04.015","pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"638.1 GB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["9k40"],"entry_doi":"10.6019/EMPIAR-12567"}}