{"EMPIAR-12464":{"imagesets":[{"segmentations":[],"name":"Gain Reference","directory":"data/20201229/gainref","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.376,"pixel_height":3.376,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Gain reference for session 20201229.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Unaligned Tilt Series Frames.","directory":"data/20201229/frames","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":675,"frames_per_image":13,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":3.438,"pixel_height":3.438,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"These are the individual frames for tilt series collected for session 20201229 by cryo-ET of lamella produced by cryo-FIB of VZV infected MeWo cells.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Gain Reference","directory":"data/20211103/gainref","category":"micrographs - 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Frames per image 200 was used as a place holder as the thickness (Z) for each tomogram varies due to ice thickness of cryo-FIB lamella.","image_width":"1022","image_height":"1440"},{"segmentations":[],"name":"IMOD Aligned Stacks for VZV Capsid Portal Processing","directory":"data/relion/imod","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":97,"frames_per_image":60,"frame_range_min":20,"frame_range_max":60,"voxel_type":"16 BIT FLOAT","pixel_width":3.44,"pixel_height":3.44,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"This folder contains a subset of folders from IMOD alignments performed to generate files for input into the Relion 4 tomography pipeline.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Segmentation using Dragonfly","directory":"data/Dragonfly","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED 16 BIT INTEGER","pixel_width":13.76,"pixel_height":13.76,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"This folder contains a reconstructed tomogram along with Dragonfly files used for training and segmentation. The individual segments are available in the ChimeraX-Segmentation folder.","image_width":"1023","image_height":"1440"}],"workflow_file":null,"grant_references":[{"funding_body":"National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)","code":"AI20459","country":"United States"},{"funding_body":"National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)","code":"AI159375","country":"United States"},{"funding_body":"National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)","code":"GM130332","country":"United States"},{"funding_body":"National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)","code":"GM150905","country":"United States"}],"version_history":[],"title":"Heterogeneous Assembly of Herpesvirus Capsids In Situ Illuminated by Cryo-FIB/ET.","principal_investigator":[{"author_orcid":"0000-0002-4614-7310","middle_name":"Lyne","organization":"Stanford University","street":"240 Pasteur Drive","town_or_city":"Stanford","state_or_province":"California","post_or_zip":"94305","telephone":null,"fax":null,"first_name":"Stefan","last_name":"Oliver","email":"sloliver [at] stanford.edu","country":"United States","entry":"EMPIAR-12464"}],"status":"REL","deposition_date":"2024-11-11","release_date":"2026-02-26","obsolete_date":null,"update_date":"2026-02-26","corresponding_author":{"author":{"author_orcid":"0000-0002-4614-7310","middle_name":"Lyne","organization":"SLAC National Accelerator Laboratory, Division of Cryo-EM and Bioimaging","street":null,"town_or_city":"Menlo Park","state_or_province":"California","post_or_zip":"94025","first_name":"Stefan","last_name":"Oliver","country":"United States"}},"authors":[{"author":{"name":"Oliver SL","author_orcid":"0000-0002-4614-7310"}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Oliver SL","author_orcid":"0000-0002-4614-7310"}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Heterogeneous Assembly of Herpesvirus Capsids In Situ Illuminated by Cryo-FIB/ET.","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":null,"pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"","journal_abbreviation":"","issue":null,"preprint":false}],"dataset_size":"3.3 TB","experiment_type":"FIB-SEM","scale":"virus","entry_doi":"10.6019/EMPIAR-12464"}}