{"EMPIAR-12332":{"imagesets":[{"segmentations":[],"name":"[EMD-32765 / 7WSR] Cryo-EM structure of the barley Yellow stripe 1 transporter","directory":"data/apo","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":5278,"frames_per_image":50,"frame_range_min":1,"frame_range_max":50,"voxel_type":"UNSIGNED BYTE","pixel_width":0.8285,"pixel_height":0.8285,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Microscope: FEI TITAN Krios\n- Detector: Gatan K3 BIOQUANTUM\n- Acceleration voltage (kV): 300\n- The pixel size in the image header (1 Å/px) is wrong. 0.8285 Å/px is the calibrated value.\n- Spherical aberration (Cs) : 2.7\n- Nominal Defocus (μm): 0.8 - 2.5 \n- Average electron dose per image (e-/A2): 50.3\n- Number of frames per image: 50\n- Please use 'gain.mrc' as a gain reference without rotation and y-flipping.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"[EMD-32766 / 7WST] Cryo-EM structure of the barley Yellow stripe 1 transporter in complex with Fe(III)-DMA","directory":"data/FeDMA","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":11930,"frames_per_image":48,"frame_range_min":1,"frame_range_max":48,"voxel_type":"UNSIGNED BYTE","pixel_width":0.8285,"pixel_height":0.8285,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Microscope: FEI TITAN Krios\n- Detector: Gatan K3 BIOQUANTUM\n- Acceleration voltage (kV): 300\n- The pixel size in the image header (1 Å/px) is wrong. 0.8285 Å/px is the calibrated value.\n- Spherical aberration (Cs) : 2.7\n- Nominal Defocus (μm): 0.6 - 2.5\n- Average electron dose per image (e-/A2): 51.4\n- Number of frames per image: 48\n- Please use 'gain.mrc' as a gain reference without rotation and y-flipping.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"[EMD-32767 / 7WSU] Cryo-EM structure of the barley Yellow stripe 1 transporter in complex with Fe(III)-PDMA","directory":"data/FePDMA","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":6027,"frames_per_image":48,"frame_range_min":1,"frame_range_max":48,"voxel_type":"UNSIGNED BYTE","pixel_width":0.8285,"pixel_height":0.8285,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Microscope: FEI TITAN Krios\n- Detector: Gatan K3 BIOQUANTUM\n- Acceleration voltage (kV): 300\n- The pixel size in the image header (1 Å/px) is wrong. 0.8285 Å/px is the calibrated value.\n- Spherical aberration (Cs) : 2.7\n- Nominal Defocus (μm): 0.8 - 2.5\n- Average electron dose per image (e-/A2): 49.8\n- Number of frames per image: 48\n- Please use 'gain.mrc' as a gain reference without rotation and y-flipping.","image_width":"5760","image_height":"4092"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cryo-EM structure of the barley Yellow stripe 1 transporter","principal_investigator":[{"author_orcid":"0000-0001-9285-1256","middle_name":null,"organization":"RIKEN Center for Biosystems Dynamics Research","street":"1-7-22 Suehiro-cho","town_or_city":"Tsurumi-ku, Yokohama","state_or_province":"Kanagawa","post_or_zip":"230-0045","telephone":null,"fax":null,"first_name":"Atsushi","last_name":"Yamagata","email":"atsushi.yamagata [at] riken.jp","country":"Japan","entry":"EMPIAR-12332"}],"status":"REL","deposition_date":"2024-09-18","release_date":"2025-07-06","obsolete_date":null,"update_date":"2025-07-06","corresponding_author":{"author":{"author_orcid":"0000-0001-9285-1256","middle_name":null,"organization":"RIKEN Center for Biosystems Dynamics Research","street":"1-7-22 Suehiro-cho","town_or_city":"Tsurumi-ku, Yokohama","state_or_province":"Kanagawa","post_or_zip":"230-0045","first_name":"Atsushi","last_name":"Yamagata","country":"Japan"}},"authors":[{"author":{"name":"Yamagata A","author_orcid":"0000-0001-9285-1256"}},{"author":{"name":"Murata Y","author_orcid":"0000-0003-1891-2609"}},{"author":{"name":"Namba K","author_orcid":"0000-0003-1548-5656"}},{"author":{"name":"Terada T","author_orcid":"0000-0002-7091-0646"}},{"author":{"name":"Fukai S","author_orcid":"0000-0002-1241-1443"}},{"author":{"name":"Shirouzu M","author_orcid":"0000-0002-7997-2149"}}],"cross_references":["EMD-32765","EMD-32766","EMD-32767"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Yamagata A","author_orcid":"0000-0001-9285-1256"},{"name":"Murata Y","author_orcid":"0000-0003-1891-2609"},{"name":"Namba K","author_orcid":"0000-0003-1548-5656"},{"name":"Terada T","author_orcid":"0000-0002-7091-0646"},{"name":"Fukai S","author_orcid":"0000-0002-1241-1443"},{"name":"Shirouzu M","author_orcid":"0000-0002-7997-2149"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Uptake mechanism of iron-phytosiderophore from the soil based on the structure of yellow stripe transporter","volume":"13","country":"","first_page":null,"last_page":null,"year":"2022","language":"English","doi":"10.1038/s41467-022-34930-1","pubmedid":"36424382","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature communications","journal_abbreviation":"Nat Commun","issue":"1","preprint":false}],"dataset_size":"5.0 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["7wsr","7wst","7wsu"],"entry_doi":"10.6019/EMPIAR-12332"}}