{"EMPIAR-12287":{"imagesets":[{"segmentations":[],"name":"Micrographs of vitrified buffer with labels of objects that can obscure particles","directory":"data/ice_images","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":678,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.096,"pixel_height":1.096,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Frame-aligned micrographs of vitrified buffer with associated labels (.json files in AnyLabeling v0.3.3 format) of objects that can obscure particles.\nThis directory must either go in your VirtualIce installation directory for it to work automatically or in a different directory and pointed to with VirtualIce.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Frame stacks of vitrified buffer","directory":"data/17may18h_frames","category":"micrographs - multiframe","header_format":"MRC","data_format":"MRCS","num_images_or_tilt_series":900,"frames_per_image":75,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":1.096,"pixel_height":1.096,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Bzip2 compressed frame stacks of vitrified buffer. Collected on a Krios, Cs corrector, BioQuantum-K2 (15eV slit width), 50.81 e-/Å2 total dose, nominal defocus range randomly chosen between 1 and 3 µm. References included.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Micrographs of vitrified buffer","directory":"data/17may18h_leginon","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":897,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.096,"pixel_height":1.096,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Frame-aligned micrographs of vitrified buffer.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Downsampled micrographs of vitrified buffer tinted green with labels of objects that can obscure particles","directory":"data/jpegs_for_labeling","category":"micrographs - single frame","header_format":"JPEG","data_format":"JPEG","num_images_or_tilt_series":900,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"16 BIT FLOAT","pixel_width":4.384,"pixel_height":4.384,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Frame-aligned, downsampled by 4 micrographs of vitrified buffer converted to JPEG and tinted green to expedite the visualization process. Associated labels (.json files in AnyLabeling v0.3.3 format) of objects that can obscure particles are included.","image_width":"960","image_height":"928"}],"workflow_file":null,"grant_references":[{"funding_body":"National Institutes of Health (NIH)","code":"F32GM128303","country":"United States"},{"funding_body":"Simons Foundation","code":"SF349247","country":"United States"}],"version_history":[],"title":"CryoEM ice images and labels used for VirtualIce","principal_investigator":[{"author_orcid":"0000-0001-8634-2279","middle_name":"J","organization":"Simons Electron Microscopy Center, New York Structural Biology Center","street":"89 Convent Avenue","town_or_city":"New York","state_or_province":"New York","post_or_zip":"10027","telephone":"2129390660","fax":null,"first_name":"Alex","last_name":"Noble","email":"anoble [at] nysbc.org","country":"United States","entry":"EMPIAR-12287"}],"status":"REL","deposition_date":"2024-09-05","release_date":"2024-10-11","obsolete_date":null,"update_date":"2024-10-11","corresponding_author":{"author":{"author_orcid":"0000-0001-8634-2279","middle_name":"J","organization":"Simons Electron Microscopy Center, New York Structural Biology Center","street":"89 Convent Avenue","town_or_city":"New York","state_or_province":"New York","post_or_zip":"10027","first_name":"Alex","last_name":"Noble","country":"United States"}},"authors":[{"author":{"name":"Noble AJ","author_orcid":"0000-0001-8634-2279"}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Noble AJ","author_orcid":"0000-0001-8634-2279"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"VirtualIce: Half-synthetic CryoEM Micrograph Generator","volume":null,"country":"","first_page":null,"last_page":null,"year":"2024","language":"English","doi":"10.1101/2024.09.28.615520","pubmedid":null,"details":"The sample is vitrified buffer (no protein).\nIncludes raw frames, aligned micrographs using MotionCor2 with 5x5 patches, associated labels of objects that can obscure particles, and green-tinted downsampled jpeg images used for manual labeling.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"bioRxiv","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"308.6 GB","experiment_type":"Exception","scale":"molecule","entry_doi":"10.6019/EMPIAR-12287"}}