{"EMPIAR-12164":{"imagesets":[{"segmentations":[],"name":"Low magnification raw SBF SEM overview images (ROI00) of notoroid with TNE-Zs green notochord in longitudinal orientation (Run17)","directory":"data/FigS26-ROI03/Run17-ROI00","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":114,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":600.0,"pixel_height":600.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Low magnification overview SBF SEM images (ROI00), linked to higher magnification images in ROI01 and ROI02 below. Imaged at 1.8kV, 2us dwell, with a 20um aperture and with FCC. 50nm slices.","image_width":"6000","image_height":"3979"},{"segmentations":[],"name":"High magnification raw SBF SEM overview images (ROI01) of notoroid with TNE-Zs green notochord in longitudinal orientation (Run17)","directory":"data/FigS26-ROI03/Run17-ROI01","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":114,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":90.0,"pixel_height":90.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"High magnification images (ROI01) linked to lower magnification images in ROI00. Imaged at 1.8kV, 2us dwell, with a 20um aperture and with FCC. 50nm slices.","image_width":"10000","image_height":"8000"},{"segmentations":[],"name":"High magnification raw SBF SEM overview images (ROI02) of notoroid with TNE-Zs green notochord in longitudinal orientation (Run17)","directory":"data/FigS26-ROI03/Run17-ROI02","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":114,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":90.0,"pixel_height":90.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"High magnification images (ROI01) linked to lower magnification images in ROI00. Imaged at 1.8kV, 2us dwell, with a 20um aperture and with FCC. 50nm slices.","image_width":"10000","image_height":"8000"},{"segmentations":[],"name":"Survey image","directory":"data/Survey-image","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Survey image showing the relative position of each ROI.","image_width":null,"image_height":null}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 3)","principal_investigator":[{"author_orcid":"0000-0002-5703-2922","middle_name":null,"organization":"The Francis Crick Institute, Electron Microscopy STP","street":"Midland road","town_or_city":"London","state_or_province":null,"post_or_zip":"NW1 1AT","telephone":null,"fax":null,"first_name":"Marie-Charlotte","last_name":"Domart","email":"marie-charlotte.domart [at] crick.ac.uk","country":"United Kingdom","entry":"EMPIAR-12164"}],"status":"REL","deposition_date":"2024-03-01","release_date":"2024-09-26","obsolete_date":null,"update_date":"2025-04-11","corresponding_author":{"author":{"author_orcid":"0000-0002-5703-2922","middle_name":null,"organization":"The Francis Crick Institute, Electron Microscopy STP","street":"1 Midland Road","town_or_city":"London","state_or_province":null,"post_or_zip":"NW1 1AT","first_name":"Marie-Charlotte","last_name":"Domart","country":"United Kingdom"}},"authors":[{"author":{"name":"Marie-Charlotte Domart MCD","author_orcid":"0000-0002-5703-2922"}},{"author":{"name":"Lucy M Collinson LMC","author_orcid":null}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Tiago Rito TR","author_orcid":null},{"name":"Ashley R.G. Libby ARGL","author_orcid":null},{"name":"Madeleine Demuth MD","author_orcid":null},{"name":"Marie-Charlotte Domart MCD","author_orcid":"0000-0002-5703-2922"},{"name":"Jake Cornwall-Scoones JCS","author_orcid":null},{"name":"James Briscoe JB","author_orcid":null}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Notochord and axial progenitor generation by timely BMP and NODAL inhibition during vertebrate trunk formation","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":"10.1038/s41586-024-08332-w","pubmedid":null,"details":"The data in this entry are the ones shown in Fig S26 panels O-U","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"39.2 GB","experiment_type":"SBF-SEM","scale":"tissue","entry_doi":"10.6019/EMPIAR-12164"}}