{"EMPIAR-11969":{"imagesets":[{"segmentations":[],"name":"Unaligned multiframe tilt images of mitotic chromosomes","directory":"data/Frames","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":41,"frames_per_image":10,"frame_range_min":1,"frame_range_max":10,"voxel_type":"UNSIGNED BYTE","pixel_width":2.075,"pixel_height":2.075,"micrographs_file_pattern":"data/Frames/ts_160_00**.tif","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Raw unaligned multi-frame micrographs were aligned, sorted and combined into tilt series stacks using Motioncor2. The tilt series were reconstructed using etomo (IMOD). \nOriginal metadata files (.mdoc) are provided in the mdoc folder and tomograms reconstructed using etomo (IMOD) (.mrc file in Tomogram folder). The alignment information (.xf file) is in the Alignment_info folder.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Aligned tilt series of mitotic chromosome","directory":"data/TiltSeries","category":"tilt series","header_format":"MRCS","data_format":"MRCS","num_images_or_tilt_series":1,"frames_per_image":41,"frame_range_min":1,"frame_range_max":41,"voxel_type":"32 BIT FLOAT","pixel_width":2.075,"pixel_height":2.075,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series stack (.mrcs file) aligned with etomo (IMOD).","image_width":"4092","image_height":"5760"},{"segmentations":[],"name":"Reconstructed tomogram of mitotic chromosome","directory":"data/Tomogram","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"16 BIT FLOAT","pixel_width":8.3,"pixel_height":8.3,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomogram (4-times binned reconstructions, original pixel size 2.075 Å) from aligned tilt series (.mrcs file in TiltSeries folder). The coordinates of nucleosomes annotated by Template Learning and template matching are in the picks folder.","image_width":"1023","image_height":"1440"}],"workflow_file":null,"grant_references":[{"funding_body":"Agence Nationale de la Recherche (ANR)","code":"ANR-20-CE11-0020-02","country":"France"},{"funding_body":"Agence Nationale de la Recherche (ANR)","code":"ANR-23-CE45-0012-01","country":"France"}],"version_history":[],"title":"Cryo-electron tomography of mitotic chromosomes isolated from chicken DT-40 cells with annotated nucleosome positions","principal_investigator":[{"author_orcid":"0000-0003-2298-8964","middle_name":null,"organization":"Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology (IGBMC)","street":"1 rue Laurent Fries","town_or_city":"Illkirch","state_or_province":null,"post_or_zip":"67404","telephone":null,"fax":null,"first_name":"Mikhail","last_name":"Eltsov","email":"eltsovm [at] igbmc.fr","country":"France","entry":"EMPIAR-11969"},{"author_orcid":"0000-0001-6263-0452","middle_name":null,"organization":"Centre INRIA de l’Université de Rennes","street":"Campus Universitaire de Beaulieu","town_or_city":"35042 Rennes","state_or_province":null,"post_or_zip":"35042","telephone":null,"fax":null,"first_name":"Charles","last_name":"Kervrann","email":"charles.kervrann [at] inria.fr","country":"France","entry":"EMPIAR-11969"}],"status":"REL","deposition_date":"2024-03-14","release_date":"2025-10-15","obsolete_date":null,"update_date":"2025-10-15","corresponding_author":{"author":{"author_orcid":"0000-0003-2298-8964","middle_name":null,"organization":"Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology (IGBMC)","street":"1 rue Laurent Fries","town_or_city":"Illkirch","state_or_province":null,"post_or_zip":"67404","first_name":"Mikhail","last_name":"Eltsov","country":"France"}},"authors":[{"author":{"name":"Patra G","author_orcid":"0000-0002-7634-9386"}},{"author":{"name":"Harastani M","author_orcid":"0000-0001-9154-1109"}},{"author":{"name":"Eltsov M","author_orcid":"0000-0003-2298-8964"}}],"cross_references":["EMD-19823","EMD-19825"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Harastani M","author_orcid":"0000-0001-9154-1109"},{"name":"Patra G","author_orcid":"0000-0002-7634-9386"},{"name":"Kervrann C","author_orcid":"0000-0001-6263-0452"},{"name":"Eltsov M","author_orcid":"0000-0003-2298-8964"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Template Learning: Deep learning with domain randomization for particle picking in cryo-electron tomography","volume":"16","country":"France","first_page":null,"last_page":null,"year":"2025","language":"English","doi":"10.1038/s41467-025-63895-0","pubmedid":"41044063","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature communications","journal_abbreviation":"Nat Commun","issue":"1","preprint":false}],"dataset_size":"6.4 GB","experiment_type":"EMDB","scale":"molecule","entry_doi":"10.6019/EMPIAR-11969"}}