{"EMPIAR-11897":{"imagesets":[{"segmentations":[],"name":"Frames","directory":"data/TS_frames","category":"micrographs - multiframe","header_format":"MRC","data_format":"TIFF","num_images_or_tilt_series":42,"frames_per_image":8,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":2.137,"pixel_height":2.137,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"42 tilt series consisting of maximally 61 tilts each; each image consists of 8 frames. GainRef and defects file are included.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Raw tilt series","directory":"data/TS_raw","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":42,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":2.137,"pixel_height":2.137,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"42 tilt series; .mdoc files are included. Bad tilts were excluded from the tilt series (as described in the manuscript).","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Isonet corrected tomograms","directory":"data/isonet_corrected","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":42,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":17.1,"pixel_height":17.1,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Isonet-corrected tomograms, reconstructed from cleaned tilt series (as described in the manuscript).","image_width":"510","image_height":"720"}],"workflow_file":null,"grant_references":[{"funding_body":"Austrian Science Fund","code":"P33367","country":"Austria"},{"funding_body":"Austrian Science Fund","code":"E435","country":"Austria"},{"funding_body":"European Research Council (ERC)","code":"724373","country":"Austria"},{"funding_body":"Chan Zuckerberg Initiative","code":"DAF2021-234754","country":"United States"}],"version_history":[],"title":"Unveiling the ultrastructural landscape of extracellular matrix via lift-out cryo-FIBSEM and cryo-ET","principal_investigator":[{"author_orcid":"0000-0003-4790-8078","middle_name":"K.M.","organization":"Institute of Science and Technology Austria","street":"Am Campus 1","town_or_city":"Klosterneuburg","state_or_province":"Lower Austria","post_or_zip":"3400","telephone":null,"fax":null,"first_name":"Florian","last_name":"Schur","email":"florian.schur [at] ista.ac.at","country":"Austria","entry":"EMPIAR-11897"}],"status":"REL","deposition_date":"2024-01-25","release_date":"2024-03-19","obsolete_date":null,"update_date":"2024-11-19","corresponding_author":{"author":{"author_orcid":"0000-0003-4790-8078","middle_name":"K.M.","organization":"Institute of Science and Technology Austria","street":"Am Campus 1","town_or_city":"Klosterneuburg","state_or_province":"Lower Austria","post_or_zip":"3400","first_name":"Florian","last_name":"Schur","country":"Austria"}},"authors":[{"author":{"name":"Zens B.","author_orcid":"0000-0002-9561-1239"}},{"author":{"name":"Fäßler F.","author_orcid":"0000-0001-7149-769X"}},{"author":{"name":"Hansen J.M.","author_orcid":"0000-0001-7967-2085"}},{"author":{"name":"Hauschild R.","author_orcid":"0000-0001-9843-3522"}},{"author":{"name":"Datler J.","author_orcid":"0000-0002-3616-8580"}},{"author":{"name":"Hodirnau V.V.","author_orcid":"0000-0003-3904-947X"}},{"author":{"name":"Zheden V.","author_orcid":"0000-0002-9438-4783"}},{"author":{"name":"Alanko J.","author_orcid":"0000-0002-7698-3061"}},{"author":{"name":"Sixt M.","author_orcid":"0000-0002-6620-9179"}},{"author":{"name":"Schur F.K.M.","author_orcid":"0000-0003-4790-8078"}}],"cross_references":["EMD-18494","EMD-18490","EMD-18492","EMD-18491","EMD-18493"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Zens B","author_orcid":"0000-0002-9561-1239"},{"name":"Fäßler F","author_orcid":"0000-0001-7149-769X"},{"name":"Hansen JM","author_orcid":"0000-0001-7967-2085"},{"name":"Hauschild R","author_orcid":"0000-0001-9843-3522"},{"name":"Datler J","author_orcid":"0000-0002-3616-8580"},{"name":"Hodirnau VV","author_orcid":"0000-0003-3904-947X"},{"name":"Zheden V","author_orcid":"0000-0002-9438-4783"},{"name":"Alanko J","author_orcid":"0000-0002-7698-3061"},{"name":"Sixt M","author_orcid":"0000-0002-6620-9179"},{"name":"Schur FKM","author_orcid":"0000-0003-4790-8078"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Lift-out cryo-FIBSEM and cryo-ET reveal the ultrastructural landscape of extracellular matrix","volume":"223","country":"","first_page":null,"last_page":null,"year":"2024","language":"English","doi":"10.1083/jcb.202309125","pubmedid":"38506714","details":"42 tomograms were acquired on FIB milled lamellae from Cell-derived matrices (CDMs). Frames (including GainRef and defects file), .mdoc files for acquired tilt series, as well as IsoNet-filtered reconstructed tomograms are provided.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"The Journal of cell biology","journal_abbreviation":"J Cell Biol","issue":"6","preprint":false}],"dataset_size":"183.0 GB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-11897"}}