{"EMPIAR-11851":{"imagesets":[{"segmentations":[],"name":"SBF-SEM imaging of a larval cheatal sac at 48 hours post fertilisation, blade region of a chaeta","directory":"data/Dataset1_200827_Blade_48hpf","category":"reconstructed volumes","header_format":"PNG","data_format":"PNG","num_images_or_tilt_series":1376,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":10.0,"pixel_height":10.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Voxel size: 10x10x40 nm\n\nSBF-SEM imaging of a larval cheatal sac at 48 hours post fertilisation. \nThese files show one of the cheatoblasts constructing the blade region \nof a chaeta\nFiles:\nDataset1_200827_Blade_48hpf.am -> full imaged stack\nDataset1_200827_Blade_48hpf_crop.am -> crop from the above full stack with the model:\n\tLabels_Dataset1_200827_Blade_48hpf_crop.model -> Model in MIB format (https://mib.helsinki.fi/)\n\tLabels_Dataset1_200827_Blade_48hpf_crop.tif -> Model in TIF format \n\t\tLabels Ids: \n\t\t\t\t0 - background\n\t\t\t\t1 - channels (green in the snapshot)\n\t\t\t\t2 - shell (brown in the snapshot)\n\t\nAdditional information:\t\nSource for movie \"S3_SBF-SEM_Reconstruction_Blade\" from the manuscript \nDynamic microvilli sculpt bristles at nanometric scale by\nKyojiro N Ikeda, Ilya Belevich, Luis Zelaya-Lainez, Lukas Orel, Josef Füssl, \nJaromír Gumulec, Christian Hellmich, Eija Jokitalo, Florian Raible","image_width":"5092","image_height":"5526"},{"segmentations":[],"name":"SBF-SEM imaging of a larval cheatal sac at 48 hours post fertilisation, joint region of a chaeta","directory":"data/Dataset2_200916_Joint_48hpf","category":"reconstructed volumes","header_format":"PNG","data_format":"PNG","num_images_or_tilt_series":936,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":10.0,"pixel_height":10.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Voxel size: 10x10x40 nm\n\nSBF-SEM imaging of a larval cheatal sac at 48 hours post fertilisation. \nThese files show one of the cheatoblasts constructing the joint region \nof a chaeta\n\nFiles:\nDataset2_200916_Joint_48hpf.am -> full imaged stack\nDataset2_200916_Joint_48hpf_crop.am -> crop from the above full stack with the model:\n\tLabels_Dataset2_200916_Joint_48hpf_crop.model -> Model in MIB format (https://mib.helsinki.fi/)\n\tLabels_Dataset2_200916_Joint_48hpf_crop.tif -> Model in TIF format \n\t\tLabels Ids: \n\t\t\t\t0 - background\n\t\t\t\t1 - cavity in the shaft (blue in the snapshot)\n\t\t\t\t2 - channels (green in the snapshot)\n\t\t\t\t\n\tLabels_Dataset2_200916_Joint_48hpf_crop_shell.model\n\tLabels_Dataset2_200916_Joint_48hpf_crop_shell.tif\n\t\tLabels Ids: \n\t\t\t\t0 - background\n\t\t\t\t1 - shell (brown in the snapshot)\n\t\nAdditional information:\t\nSource for movie \"S5_SBF-SEM_Reconstruction_Joint\" from the manuscript \nDynamic microvilli sculpt bristles at nanometric scale by\nKyojiro N Ikeda, Ilya Belevich, Luis Zelaya-Lainez, Lukas Orel, Josef Füssl, \nJaromír Gumulec, Christian Hellmich, Eija Jokitalo, Florian Raible","image_width":"4355","image_height":"6026"},{"segmentations":[],"name":"SBF-SEM imaging of a larval cheatal sac at 48 hours post fertilisation, shaft region of a chaeta","directory":"data/Dataset3_211020_Shaft_64hpf","category":"reconstructed volumes","header_format":"PNG","data_format":"PNG","num_images_or_tilt_series":1071,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":10.0,"pixel_height":10.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Voxel size: 10x10x40 nm\n\nSBF-SEM imaging of a larval cheatal sac at 64 hours post fertilisation. \nThese files show one of the cheatoblasts constructing the shaft region of a chaeta\n\nFiles:\nDataset3_211020_Shaft_64hpf.am -> full imaged stack\nDataset3_211020_Shaft_64hpf_crop.am -> crop from the above full stack with the model:\n\tLabels_Dataset3_211020_Shaft_64hpf_crop.model -> Model in MIB format (https://mib.helsinki.fi/)\n\tLabels_Dataset3_211020_Shaft_64hpf_crop.tif -> Model in TIF format \n\t\tLabels Ids: \n\t\t\t\t0 - background\n\t\t\t\t1 - channels (green in the snapshot)\n\t\t\t\t2 - amorphous material inside the cavity of the shaft (yellow in the snapshot)\n\t\t\t\t3 - cavity in the shaft (blue in the snapshot)\n\t\t\t\t\n\tLabels_Dataset3_211020_Shaft_64hpf_shell.model\n\tLabels_Dataset3_211020_Shaft_64hpf_shell.tif\n\t\tLabels Ids: \n\t\t\t\t0 - background\n\t\t\t\t1 - shell (brown in the snapshot)\n\t\nAdditional information:\t\nSource for movie S7_SBF-SEM_Reconstruction_Shaft\" from the manuscript \nDynamic microvilli sculpt bristles at nanometric scale by\nKyojiro N Ikeda, Ilya Belevich, Luis Zelaya-Lainez, Lukas Orel, Josef Füssl, \nJaromír Gumulec, Christian Hellmich, Eija Jokitalo, Florian Raible","image_width":"3388","image_height":"3954"}],"workflow_file":null,"grant_references":[{"funding_body":"Austrian Science Fund","code":"I2972","country":"Austria"},{"funding_body":"Austrian Science Fund","code":"F78","country":"Austria"},{"funding_body":"Austrian Science Fund","code":"Y1093","country":"Austria"}],"version_history":[],"title":"SBF-SEM datasets of chaetoblasts constructing bristles in Platynereis dumerilii","principal_investigator":[{"author_orcid":"0000-0002-4515-6485","middle_name":null,"organization":"Max Perutz Labs, University of Vienna","street":"Vienna BioCenter  Dr.-Bohr-Gasse 9","town_or_city":"Vienna","state_or_province":"Wien","post_or_zip":"1030","telephone":null,"fax":null,"first_name":"Florian","last_name":"Raible","email":"florian.raible [at] univie.ac.at","country":"Austria","entry":"EMPIAR-11851"},{"author_orcid":"0000-0002-4962-0767","middle_name":"N","organization":"Max Perutz Labs, University of Vienna","street":"Vienna BioCenter  Dr.-Bohr-Gasse 9","town_or_city":"Vienna","state_or_province":"Wien","post_or_zip":"1030","telephone":null,"fax":null,"first_name":"Kyojiro","last_name":"Ikeda","email":"kyojiro.ikeda [at] univie.ac.at","country":"Austria","entry":"EMPIAR-11851"}],"status":"REL","deposition_date":"2023-12-08","release_date":"2024-06-06","obsolete_date":null,"update_date":"2024-06-06","corresponding_author":{"author":{"author_orcid":"0000-0003-2190-4909","middle_name":null,"organization":"Electron Microscopy Unit, Institute of Biotechnology, University of Helsinki","street":"PL56 (Viikinkaari 9)","town_or_city":"Helsinki","state_or_province":"Uusimaa","post_or_zip":"00014","first_name":"Ilya","last_name":"Belevich","country":"Finland"}},"authors":[{"author":{"name":"Ikeda KN","author_orcid":"0000-0002-4962-0767"}},{"author":{"name":"Belevich I","author_orcid":"0000-0003-2190-4909"}},{"author":{"name":"Zelaya-Lainez L","author_orcid":"0000-0003-3298-9792"}},{"author":{"name":"Orel L","author_orcid":"0000-0001-6999-5833"}},{"author":{"name":"Füssl J","author_orcid":"0000-0001-7472-8561"}},{"author":{"name":"Gumulec J","author_orcid":"0000-0002-9658-3444"}},{"author":{"name":"Hellmich C","author_orcid":"0000-0003-0153-4859"}},{"author":{"name":"Jokitalo E","author_orcid":"0000-0002-4159-6934"}},{"author":{"name":"Raible F","author_orcid":"0000-0002-4515-6485"}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Ikeda KN","author_orcid":"0000-0002-4962-0767"},{"name":"Belevich I","author_orcid":"0000-0003-2190-4909"},{"name":"Zelaya-Lainez L","author_orcid":"0000-0003-3298-9792"},{"name":"Orel L","author_orcid":"0000-0001-6999-5833"},{"name":"Füssl J","author_orcid":null},{"name":"Gumulec J","author_orcid":"0000-0002-9658-3444"},{"name":"Hellmich C","author_orcid":null},{"name":"Jokitalo E","author_orcid":"0000-0002-4159-6934"},{"name":"Raible F","author_orcid":"0000-0002-4515-6485"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Dynamic microvilli sculpt bristles at nanometric scale","volume":"15","country":"","first_page":null,"last_page":null,"year":"2024","language":"English","doi":"10.1038/s41467-024-48044-3","pubmedid":"38740737","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature communications","journal_abbreviation":"Nat Commun","issue":"1","preprint":false}],"dataset_size":"79.7 GB","experiment_type":"SBF-SEM","scale":"tissue","entry_doi":"10.6019/EMPIAR-11851"}}