{"EMPIAR-11830":{"imagesets":[{"segmentations":[],"name":"Chlamy Visual proteomics project containing 1829 tilt series and preprocessed metadata for C. reinhardtii prepared using cryo-plasmaFIB milling","directory":"data/chlamy_visual_proteomics","category":"tilt series","header_format":"EER","data_format":"EER","num_images_or_tilt_series":1829,"frames_per_image":0,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 32 BIT INTEGER","pixel_width":1.96,"pixel_height":1.96,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"A Minimal TOMOMAN (https://doi.org/10.1093/micmic/ozad067.516) project.","image_width":"4096","image_height":"4096"},{"segmentations":[],"name":"Chlamy Visual proteomics denoised tomograms","directory":"data/cryocare_bin4","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1829,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":7.84,"pixel_height":7.84,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Denoised using CryoCARE by using workflow implemented in TOMOMAN","image_width":"1024","image_height":"1024"},{"segmentations":[],"name":"Chlamy Visual proteomics 3D CTF-corrected tomograms","directory":"data/ctf3d_bin4","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1829,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED 16 BIT INTEGER","pixel_width":7.84,"pixel_height":7.84,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"3D CTF-corrected tomograms calculated with IMOD.","image_width":"1024","image_height":"1024"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling","principal_investigator":[{"author_orcid":"0000-0003-2020-3561","middle_name":null,"organization":"1 Max Plank Institute of Biochemistry, 2 Thermo Fisher Scientific","street":null,"town_or_city":"Eindhoven","state_or_province":null,"post_or_zip":"5651","telephone":null,"fax":null,"first_name":"Sagar","last_name":"Khavnekar","email":"cryosagar [at] gmail.com","country":"Netherlands","entry":"EMPIAR-11830"}],"status":"REL","deposition_date":"2024-04-09","release_date":"2024-04-09","obsolete_date":null,"update_date":"2025-02-28","corresponding_author":{"author":{"author_orcid":"0000-0003-2020-3561","middle_name":null,"organization":"1 Max Plank Institute of Biochemistry, 2 Thermo Fisher Scientific","street":null,"town_or_city":"Eindhoven","state_or_province":null,"post_or_zip":"5651","first_name":"Sagar","last_name":"Khavnekar","country":"Netherlands"}},"authors":[{"author":{"name":"Kelley R","author_orcid":null}},{"author":{"name":"Khavnekar S","author_orcid":"0000-0003-2020-3561"}},{"author":{"name":"Zhang X","author_orcid":"0000-0003-3554-780X"}},{"author":{"name":"Obr M","author_orcid":"0000-0003-1756-6564"}},{"author":{"name":"Chakraborty S","author_orcid":"0000-0002-6307-8441"}},{"author":{"name":"Koh AF","author_orcid":"0000-0001-6682-4449"}},{"author":{"name":"Heebner J","author_orcid":"0000-0002-7025-7608"}},{"author":{"name":"Righetto R","author_orcid":"0000-0003-4247-4303"}},{"author":{"name":"Waltz F","author_orcid":"0000-0002-2251-3363"}},{"author":{"name":"McCafferty C","author_orcid":null}},{"author":{"name":"Van den Hoek H","author_orcid":null}},{"author":{"name":"Wietrzynski W","author_orcid":"0000-0001-8898-2392"}},{"author":{"name":"Van Der Stappen P","author_orcid":null}},{"author":{"name":"Michael A","author_orcid":"0000-0002-6080-839X"}},{"author":{"name":"Van Dorst S","author_orcid":"0000-0002-2594-9058"}},{"author":{"name":"Tagiltsev G","author_orcid":"0000-0002-9312-2108"}},{"author":{"name":"Beck F","author_orcid":null}},{"author":{"name":"Zhong E","author_orcid":"0000-0001-6345-1907"}},{"author":{"name":"Wan W","author_orcid":"0000-0003-2497-3010"}},{"author":{"name":"Briggs J","author_orcid":"0000-0003-3990-6910"}},{"author":{"name":"Plitzko J","author_orcid":null}},{"author":{"name":"Engel B","author_orcid":"0000-0002-0941-4387"}},{"author":{"name":"Kotecha A","author_orcid":"0000-0002-4480-5439"}}],"cross_references":["EMD-18306"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Kelley R","author_orcid":null},{"name":"Khavnekar S","author_orcid":"0000-0003-2020-3561"},{"name":"Righetto RD","author_orcid":null},{"name":"Heebner J","author_orcid":null},{"name":"Obr M","author_orcid":null},{"name":"Zhang X","author_orcid":null},{"name":"Chakraborty S","author_orcid":null},{"name":"Tagiltsev G","author_orcid":null},{"name":"Michael AK","author_orcid":null},{"name":"van Dorst S","author_orcid":null},{"name":"Waltz F","author_orcid":null},{"name":"McCafferty CL","author_orcid":null},{"name":"Lamm L","author_orcid":null},{"name":"Zufferey S","author_orcid":null},{"name":"Van der Stappen P","author_orcid":null},{"name":"van den Hoek H","author_orcid":null},{"name":"Wietrzynski W","author_orcid":null},{"name":"Harar P","author_orcid":null},{"name":"Wan W","author_orcid":null},{"name":"Briggs JA","author_orcid":null},{"name":"Plitzko JM","author_orcid":null},{"name":"Engel BD","author_orcid":null},{"name":"Kotecha A","author_orcid":null}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Towards community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii","volume":null,"country":"","first_page":null,"last_page":null,"year":"2024","language":"English","doi":"10.1101/2024.12.28.630444","pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"bioRxiv","journal_abbreviation":"","issue":null,"preprint":true},{"authors":[{"name":"Khavnekar S","author_orcid":null},{"name":"Kelley R","author_orcid":null},{"name":"Waltz F","author_orcid":null},{"name":"Wietrzynski W","author_orcid":null},{"name":"Zhang X","author_orcid":null},{"name":"Obr M","author_orcid":null},{"name":"Tagiltsev G","author_orcid":null},{"name":"Beck F","author_orcid":null},{"name":"Wan W","author_orcid":null},{"name":"Briggs JA","author_orcid":null},{"name":"Engel BD","author_orcid":null},{"name":"Plitzko JM","author_orcid":null},{"name":"Kotecha A","author_orcid":null}],"editors":[],"published":true,"j_or_nj_citation":false,"title":"Towards the Visual Proteomics of C. reinhardtii using High-throughput Collaborative in situ Cryo-ET","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":"10.1093/micmic/ozad067.480","pubmedid":"37613825","details":null,"book_chapter_title":null,"publisher":"","publication_location":"","journal":null,"journal_abbreviation":null,"issue":null,"preprint":null}],"dataset_size":"32.1 TB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-11830"}}