{"EMPIAR-11723":{"imagesets":[{"segmentations":[],"name":"K3 movies for gastric proton pump with DQ-02","directory":"data/8IJV/","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":9650,"frames_per_image":60,"frame_range_min":1,"frame_range_max":60,"voxel_type":"UNSIGNED BYTE","pixel_width":0.753,"pixel_height":0.753,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Please use 'CountCDSRef_2022-11-24_14.24.17_220830B06_51-1_0000.mrc' as a gain reference without rotation or flipping in RELION.\n- The flux is 1 e/A2/frame.\n- Cs is 2.7 mm.\n- Four digits in the file name represent image shift directions.\n- Movies were recorded with 5x5 image shift with two shots per hole.\n- The pixel size in the image header is not correct.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"K3 movies for gastric proton pump with DQ-06","directory":"data/8IJW/","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":8100,"frames_per_image":60,"frame_range_min":1,"frame_range_max":60,"voxel_type":"UNSIGNED BYTE","pixel_width":0.58,"pixel_height":0.58,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Please use \n  'CountCDSRef_2022-10-21_12.30.19_220830C12_76-3_0000.mrc' for 'Movies' and \n  'CountCDSRef_2022-10-21_22.12.15_220830C12_82-17_0000.mrc' for 'Movies2' \nas a gain reference without rotation or flipping in RELION.\n- The flux is 1 e/A2/frame.\n- Cs is 2.7 mm.\n- Four digits in the file name represent image shift directions.\n- Movies were recorded with 5x5 image shift with two shots per hole.\n- The pixel size in the image header is not correct.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"K3 movies for gastric proton pump with DQ-18","directory":"data/8IJX/","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":9200,"frames_per_image":60,"frame_range_min":1,"frame_range_max":60,"voxel_type":"UNSIGNED BYTE","pixel_width":0.753,"pixel_height":0.753,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Please use 'CountCDSRef_2022-12-20_13.53.39_221213A02_67-1_0000.mrc' as a gain reference without rotation or flipping in RELION.\n- The flux is 1 e/A2/frame.\n- Cs is 2.7 mm.\n- Four digits in the file name represent image shift directions.\n- Movies were recorded with 5x5 image shift with two shots per hole.\n- The pixel size in the image header is not correct.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"K3 movies for gastric proton pump with DQ-21","directory":"data/8JMN/","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":7844,"frames_per_image":50,"frame_range_min":1,"frame_range_max":50,"voxel_type":"UNSIGNED BYTE","pixel_width":0.753,"pixel_height":0.753,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"- Please use 'CountCDSRef_2023-04-27_15.38.01_230418C11_66-1_0000.mrc' as a gain reference without rotation or flipping in RELION.\n- The flux is 1 e/A2/frame.\n- Cs is 2.7 mm.\n- Four digits in the file name represent image shift directions.\n- Movies were recorded with 5x5 image shift with two shots per hole.\n- The pixel size in the image header is not correct.","image_width":"5760","image_height":"4092"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cryo-EM structure of the gastric proton pump","principal_investigator":[{"author_orcid":"0000-0003-2681-5921","middle_name":null,"organization":"Cellular and Structural Physiology Institute, Nagoya University","street":"1, Furo-cho, Chikusa-ku","town_or_city":"Nagoya","state_or_province":"Aichi","post_or_zip":"464-8601","telephone":"+81-52-747-6838","fax":null,"first_name":"Kazuhiro","last_name":"Abe","email":"kabe [at] cespi.nagoya-u.ac.jp","country":"Japan","entry":"EMPIAR-11723"}],"status":"REL","deposition_date":"2023-10-11","release_date":"2024-11-08","obsolete_date":null,"update_date":"2024-11-08","corresponding_author":{"author":{"author_orcid":"0000-0003-2681-5921","middle_name":null,"organization":"Cellular and Structural Physiology Institute, Nagoya University","street":"1, Furo-cho, Chikusa-ku","town_or_city":"Nagoya","state_or_province":"Aichi","post_or_zip":"464-8601","first_name":"Kazuhiro","last_name":"Abe","country":"Japan"}},"authors":[{"author":{"name":"Abe K","author_orcid":"0000-0003-2681-5921"}},{"author":{"name":"Yokoshima S","author_orcid":null}},{"author":{"name":"Yoshimori A","author_orcid":null}}],"cross_references":["EMD-35502","EMD-35500","EMD-36424","EMD-35501"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Abe K","author_orcid":null},{"name":"Ozako M","author_orcid":null},{"name":"Inukai M","author_orcid":null},{"name":"Matsuyuki Y","author_orcid":null},{"name":"Kitayama S","author_orcid":null},{"name":"Kanai C","author_orcid":null},{"name":"Nagai C","author_orcid":null},{"name":"Gopalasingam CC","author_orcid":null},{"name":"Gerle C","author_orcid":null},{"name":"Shigematsu H","author_orcid":null},{"name":"Umekubo N","author_orcid":null},{"name":"Yokoshima S","author_orcid":null},{"name":"Yoshimori A","author_orcid":null}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Deep learning driven de novo drug design based on gastric proton pump structures.","volume":"6","country":"","first_page":null,"last_page":null,"year":"2023","language":"English","doi":"10.1038/s42003-023-05334-8","pubmedid":"37726448","details":"gastric proton pump with de novo designed drug.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Communications Biology","journal_abbreviation":"Commun Biol","issue":null,"preprint":false}],"dataset_size":"7.3 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["8ijx","8ijv","8jmn","8ijw"],"entry_doi":"10.6019/EMPIAR-11723"}}