{"EMPIAR-11561":{"imagesets":[{"segmentations":[],"name":"Unaligned multi-frame micrographs for dataset 1 (211206)","directory":"data/211206/data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":118,"frames_per_image":10,"frame_range_min":1,"frame_range_max":10,"voxel_type":"UNSIGNED BYTE","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unaligned multi-frame micrographs (frames/*.tif) corresponding to 2 tilt series with corresponding gain reference, defect map and metadata (mdoc/*.mdoc). Data acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Tilt series and alignment information for dataset 1 (211206)","directory":"data/211206/alignment","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":2,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series following motion correction in WARP (*.st), with tilt angle information (*.rawtlt) for tilt series alignment in AreTomo and alignment solutions outputted by AreTomo (*.aln and *.xf). Data acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Reconstructed tomograms for dataset 1 (211206)","directory":"data/211206/tomograms","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":2,"frames_per_image":500,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":13.7,"pixel_height":13.7,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms (*.mrc) reconstructed by weighted back-projection in AreTomo and 4-times binned, and coordinates from subtomogram averaging of GEM2 particles (*.star). Data acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"1022","image_height":"1440"},{"segmentations":[],"name":"Unaligned multi-frame micrographs for dataset 2 (220330)","directory":"data/220330/data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":178,"frames_per_image":10,"frame_range_min":1,"frame_range_max":10,"voxel_type":"UNSIGNED BYTE","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unaligned multi-frame micrographs (frames/*.tif) corresponding to 3 tilt series with corresponding gain reference, defect map and metadata (mdoc/*.mdoc). Data acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. See README.md under 'All Files' for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Tilt series and alignment information for dataset 2 (220330)","directory":"data/220330/alignment","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":3,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series following motion correction in WARP (*.st), with tilt angle information (*.rawtlt) for tilt series alignment in AreTomo and alignment solutions outputted by AreTomo (*.aln and *.xf). Data acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Reconstructed tomograms for dataset 2 (220330)","directory":"data/220330/tomograms","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":3,"frames_per_image":500,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":13.7,"pixel_height":13.7,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms (*.mrc) reconstructed by weighted back-projection in AreTomo and 4-times binned, and coordinates from subtomogram averaging of GEM2 particles (*.star). Data acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"1022","image_height":"1440"},{"segmentations":[],"name":"Unaligned multi-frame micrographs for dataset 3 (220504)","directory":"data/220504/data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":55,"frames_per_image":8,"frame_range_min":1,"frame_range_max":8,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":3.3701,"pixel_height":3.3701,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unaligned multi-frame micrographs (frames/*.tif) corresponding to 1 tilt series with corresponding gain reference, defect map and metadata (mdoc/*.mdoc). Data acquired with Volta phase plate on a K2 Summit detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"3710","image_height":"3838"},{"segmentations":[],"name":"Tilt series and alignment information for dataset 3 (220504)","directory":"data/220504/alignment","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.3701,"pixel_height":3.3701,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series following motion correction in WARP (*.st), with tilt angle information (*.rawtlt) for tilt series alignment in AreTomo and alignment solutions outputted by AreTomo (*.aln and *.xf). Data acquired with Volta phase plate on a K2 Summit detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"3710","image_height":"3838"},{"segmentations":[],"name":"Reconstructed tomograms for dataset 3 (220504)","directory":"data/220504/tomograms","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":500,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":13.4804,"pixel_height":13.4804,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms (*.mrc) reconstructed by weighted back-projection in AreTomo and 4-times binned, and coordinates from subtomogram averaging of GEM2 particles (*.star). Data acquired with Volta phase plate on a K2 Summit detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"958","image_height":"926"},{"segmentations":[],"name":"Unaligned multi-frame micrographs for dataset 4 (220506)","directory":"data/220506/data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":293,"frames_per_image":10,"frame_range_min":1,"frame_range_max":10,"voxel_type":"UNSIGNED BYTE","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unaligned multi-frame micrographs (frames/*.tif) corresponding to 5 tilt series with corresponding gain reference, defect map and metadata (mdoc/*.mdoc). Data acquired with Volta phase plate on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Tilt series and alignment information for dataset 4 (220506)","directory":"data/220506/alignment","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":5,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series following motion correction in WARP (*.st), with tilt angle information (*.rawtlt) for tilt series alignment in AreTomo and alignment solutions outputted by AreTomo (*.aln and *.xf). Data acquired with Volta phase plate on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Reconstructed tomograms for dataset 4 (220506)","directory":"data/220506/tomograms","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":5,"frames_per_image":500,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":13.7,"pixel_height":13.7,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms (*.mrc) reconstructed by weighted back-projection in AreTomo and 4-times binned, and coordinates from subtomogram averaging of GEM2 particles (*.star). Data acquired with Volta phase plate on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"1022","image_height":"1440"},{"segmentations":[],"name":"Unaligned multi-frame micrographs for dataset 5 (220720)","directory":"data/220720/data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":340,"frames_per_image":10,"frame_range_min":1,"frame_range_max":10,"voxel_type":"UNSIGNED BYTE","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Unaligned multi-frame micrographs (frames/*.tif) corresponding to 6 tilt series with corresponding gain reference, defect map and metadata (mdoc/*.mdoc). Data acquired with Volta phase plate on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Tilt series and alignment information for dataset 5 (220720)","directory":"data/220720/alignment","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":6,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.425,"pixel_height":3.425,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series following motion correction in WARP (*.st), with tilt angle information (*.rawtlt) for tilt series alignment in AreTomo and alignment solutions outputted by AreTomo (*.aln and *.xf). Data acquired with Volta phase plate on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Reconstructed tomograms for dataset 5 (220720)","directory":"data/220720/tomograms","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":6,"frames_per_image":500,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":13.7,"pixel_height":13.7,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms (*.mrc) reconstructed by weighted back-projection in AreTomo and 4-times binned, and coordinates from subtomogram averaging of GEM2 particles (*.star). Data acquired with Volta phase plate on a K3 BioQuantum detector. See README.md under All Files for more information (also copied below).\n\n# Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells\n\nFive independent cryo-ET datasets were collected. Each dataset is organised under the following directory structure, with the directories \"data/\", \"alignment/\", and \"tomograms/\" each designated as an Image Set.\n\n- data/\n    - CountRef.mrc    gain reference\n    - defects.tif     defect map (K3 data only)\n    - frames/         unaligned, unbinned multi-frame micrographs\n    - mdoc/           MDOC files listing exposure dose, pixel size and tilt angle information for each tilt\n- alignment/\n    - TS_###.mrc/     \n        - TS_###.mrc.st        sorted, motion-corrected tilt series from WARP\n        - TS_###.mrc.rawtlt    tilt angle information corresponding to tilt series\n        - TS_###.mrc.aln       AreTomo tilt series alignment solution\n        - TS_###.mrc.xf        XF file from AreTomo alignment\n    - mdoc_edited/             MDOC files with entries for discarded tilts during alignment removed\n- tomograms/\n    - *.mrc          tomograms reconstructed by weighted back-projection in AreTomo, 4-times binned\n    - ######.star    combined STAR file listing the refined coordinates of GEM2 particles at 6.85 A/px in this dataset\n\nAcquisition parameters differ for each dataset and are specified below. Tilt series were aligned in AreTomo 1.3.1 with the following parameters: 8 by 6 patches (K3 data) or 6 by 6 patches (K2 data), VolZ 2000, AlignZ 1000, TiltAxis ## -1 (as calibrated for the magnification and microsco\npe used), TiltCor 0.\n\n## Dataset 1 (211206) - Image Sets 1 to 3\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 2 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 2 (220330) - Image Sets 4 to 6\n\nData acquired with defocus only, no Volta phase plate, on a K3 BioQuantum detector. 3 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 3 (220504) - Image Sets 7 to 9\n\nData acquired with Volta phase plate on a K2 Summit detector. 1 tilt series. Pixel size, 3.3701 A/px.\n\n## Dataset 4 (220506) - Image Sets 10 to 12\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 5 tilt series. Pixel size, 3.425 A/px.\n\n## Dataset 5 (220720) - Image Sets 13 to 15\n\nData acquired with Volta phase plate on a K3 BioQuantum detector. 6 tilt series. Pixel size, 3.425 A/px.","image_width":"1022","image_height":"1440"}],"workflow_file":null,"grant_references":[{"funding_body":"German Research Foundation (DFG)","code":"419120233","country":"Germany"},{"funding_body":"German Research Foundation (DFG)","code":"402723784","country":"Germany"},{"funding_body":"EIPOD fellowship under Marie Sklodowska-Curie Actions COFUND","code":"664726","country":"Germany"},{"funding_body":"Human Frontier Science Program (HFSP)","code":"CDA00045/2019","country":"France"},{"funding_body":"H2020 Marie Curie Actions of the European Commission","code":"101028297","country":"Belgium"}],"version_history":[],"title":"Cryo-electron tomography of GEM2-labelled Mito-EGFP in HeLa cells","principal_investigator":[{"author_orcid":"0000-0001-6968-041X","middle_name":null,"organization":"European Molecular Biology Laboratory","street":"Meyerhofstraße 1","town_or_city":"Heidelberg","state_or_province":"Baden-Württemberg","post_or_zip":"69117","telephone":null,"fax":null,"first_name":"Julia","last_name":"Mahamid","email":"julia.mahamid [at] embl.de","country":"Germany","entry":"EMPIAR-11561"},{"author_orcid":"0000-0002-1193-4648","middle_name":null,"organization":"European Molecular Biology Laboratory","street":"Meyerhofstraße 1","town_or_city":"Heidelberg","state_or_province":"Baden-Württemberg","post_or_zip":"69117","telephone":null,"fax":null,"first_name":"Sara","last_name":"Cuylen-Haering","email":"sara.cuylen-haering [at] embl.de","country":"Germany","entry":"EMPIAR-11561"}],"status":"REL","deposition_date":"2022-12-07","release_date":"2023-09-05","obsolete_date":null,"update_date":"2023-09-05","corresponding_author":{"author":{"author_orcid":"0000-0001-6968-041X","middle_name":null,"organization":"European Molecular Biology Laboratory","street":"Meyerhofstraße 1","town_or_city":"Heidelberg","state_or_province":"Baden-Württemberg","post_or_zip":"69117","first_name":"Julia","last_name":"Mahamid","country":"Germany"}},"authors":[{"author":{"name":"Fung HKH","author_orcid":"0000-0001-9568-1782"}},{"author":{"name":"Hayashi Y","author_orcid":"0000-0003-2530-7714"}},{"author":{"name":"Salo VT","author_orcid":"0000-0002-6991-2142"}},{"author":{"name":"Babenko A","author_orcid":"0000-0001-9759-1369"}},{"author":{"name":"Zagoriy I","author_orcid":"0000-0003-2523-5132"}},{"author":{"name":"Brunner A","author_orcid":"0000-0003-3136-6382"}},{"author":{"name":"Ellenberg J","author_orcid":"0000-0001-5909-701X"}},{"author":{"name":"Müller CW","author_orcid":"0000-0003-2176-8337"}},{"author":{"name":"Cuylen-Haering S","author_orcid":"0000-0002-1193-4648"}},{"author":{"name":"Mahamid J","author_orcid":"0000-0001-6968-041X"}}],"cross_references":["EMD-18194","EMD-16303"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Fung HKH","author_orcid":"0000-0001-9568-1782"},{"name":"Hayashi Y","author_orcid":"0000-0003-2530-7714"},{"name":"Salo VT","author_orcid":"0000-0002-6991-2142"},{"name":"Babenko A","author_orcid":"0000-0001-9759-1369"},{"name":"Zagoriy I","author_orcid":"0000-0003-2523-5132"},{"name":"Brunner A","author_orcid":"0000-0003-3136-6382"},{"name":"Ellenberg J","author_orcid":"0000-0001-5909-701X"},{"name":"Müller CW","author_orcid":"0000-0003-2176-8337"},{"name":"Cuylen-Haering S","author_orcid":"0000-0002-1193-4648"},{"name":"Mahamid J","author_orcid":"0000-0001-6968-041X"}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"Genetically encoded multimeric tags for subcellular protein localisation in cryo-EM","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":null,"pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"","journal_abbreviation":"","issue":null,"preprint":false}],"dataset_size":"174.2 GB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-11561"}}