{"EMPIAR-11439":{"imagesets":[{"segmentations":[],"name":"Unaligned multi-frame micrographs using super resolution mode of OmcZ nanowire","directory":"data/Micrographs","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":14005,"frames_per_image":50,"frame_range_min":1,"frame_range_max":50,"voxel_type":"UNSIGNED BYTE","pixel_width":0.411,"pixel_height":0.411,"micrographs_file_pattern":"data/Micrographs/OmcZ_micrographs_*/OMCZ_*.tif","picked_particles_file_pattern":"data/Coordinates/OMCZ_*_autopick.star","picked_particles_directory":"data/Coordinates","details":"Particles are autopicked helical particles generated by RELION 3.0.8. Micrographs are raw unaligned movies in super-resolution mode with a physical pixel size of 0.828 Å. Each micrograph contains 50 frames with a total dose of 60 e-/Å2. Super.mrc can be used as the gain reference for downstream motion correction.","image_width":"11520","image_height":"8184"}],"workflow_file":null,"grant_references":[{"funding_body":"National Science Foundation (NSF, China)","code":"1749662","country":"United States"},{"funding_body":"National Science Foundation (NSF, China)","code":"2210473","country":"United States"},{"funding_body":"National Science Foundation (NSF, China)","code":"2038000","country":"United States"},{"funding_body":"National Institutes of Health/National Library of Medicine (NIH/NLM)","code":"1DP2AI138259-01","country":"United States"},{"funding_body":"National Institutes of Health/National Library of Medicine (NIH/NLM)","code":"R01GM141192","country":"United States"},{"funding_body":"Defense Advanced Research Projects Agency (DARPA)","code":"W911NF-18-2-0100","country":"United States"}],"version_history":[],"title":"Cryo-Electron Microscopy structure of OmcZ nanowires from Geobacter sulfurreducens","principal_investigator":[{"author_orcid":"0000-0002-8206-8804","middle_name":null,"organization":"Medical Research Council Laboratory of Molecular Biology","street":"Cambridge Biomedical Campus, Francis Crick Ave","town_or_city":"Cambridge","state_or_province":"Cambridgeshire","post_or_zip":"06516","telephone":"2037377590","fax":null,"first_name":"Yangqi","last_name":"Gu","email":"yangqi.gu [at] yale.edu","country":"United States","entry":"EMPIAR-11439"},{"author_orcid":"0000-0001-5611-6633","middle_name":null,"organization":"Yale University","street":"840 West Campus Drive","town_or_city":"West Haven","state_or_province":"Connecticut","post_or_zip":"06516","telephone":"2037377590","fax":null,"first_name":"Nikhil","last_name":"Malvankar","email":"nikhil.malvankar [at] yale.edu","country":"United States","entry":"EMPIAR-11439"}],"status":"REL","deposition_date":"2022-10-06","release_date":"2023-04-12","obsolete_date":null,"update_date":"2023-04-13","corresponding_author":{"author":{"author_orcid":"0000-0002-8206-8804","middle_name":null,"organization":"Medical Research Council Laboratory of Molecular Biology","street":"Cambridge Biomedical Campus, Francis Crick Ave","town_or_city":"Cambridge","state_or_province":"Cambridgeshire","post_or_zip":"CB2 9FX","first_name":"Yangqi","last_name":"Gu","country":"United Kingdom"}},"authors":[{"author":{"name":"Gu YG","author_orcid":"0000-0002-8206-8804"}},{"author":{"name":"Srikanth V","author_orcid":"0000-0003-2498-4641"}},{"author":{"name":"Salazar-Morales AI","author_orcid":"0000-0002-8126-9460"}},{"author":{"name":"Samatey FA","author_orcid":"0000-0002-0733-2863"}},{"author":{"name":"Malvankar NS","author_orcid":"0000-0001-5611-6633"}},{"author":{"name":"Guberman-Pfeffer MGP","author_orcid":null}},{"author":{"name":"Shen CS","author_orcid":"0000-0003-3468-5629"}},{"author":{"name":"Gupta KG","author_orcid":null}},{"author":{"name":"Londer YL","author_orcid":null}},{"author":{"name":"Giska FG","author_orcid":null}},{"author":{"name":"Batista VB","author_orcid":"0000-0002-3262-1237"}}],"cross_references":["EMD-23481"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Gu Y","author_orcid":"0000-0002-8206-8804"},{"name":"Guberman-Pfeffer MJ","author_orcid":null},{"name":"Srikanth V","author_orcid":"0000-0003-2498-4641"},{"name":"Shen C","author_orcid":"0000-0003-3468-5629"},{"name":"Giska F","author_orcid":null},{"name":"Gupta K","author_orcid":null},{"name":"Londer Y","author_orcid":null},{"name":"Samatey FA","author_orcid":"0000-0002-0733-2863"},{"name":"Batista VS","author_orcid":null},{"name":"Malvankar NS","author_orcid":"0000-0001-5611-6633"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity","volume":"8","country":"United Kingdom","first_page":"284","last_page":"298","year":"2023","language":"English","doi":"10.1038/s41564-022-01315-5","pubmedid":"36732469","details":"Micrographs were recorded with super-resolution mode at 0.828 Å per pixel, with a total dose of ~60 e− Å−2 fractioned into 50 frames. A defocus range of 1–2.5 µm was used to collect ~14,500 images in total. A Quantum energy filter with a slit width at 20 eV was applied to remove inelastically scattered electrons.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature microbiology","journal_abbreviation":"Nat Microbiol","issue":"2","preprint":false}],"dataset_size":"6.5 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["7lq5"],"entry_doi":"10.6019/EMPIAR-11439"}}